BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0033.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha s...   280   7e-77

>gi|300310031|ref|YP_003774123.1| NAD(P) transhydrogenase alpha
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  280 bits (716), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 144/152 (94%), Positives = 150/152 (98%)

Query: 58  EKEIAQGVGGYARPMPADWMRRQAELVHERAKQADIIITTALIPGRKAPVLISEETVKAM 117
           EKEIAQGVGGYARPMP DWM+RQAELVHERAKQADIIITTALIPGRKAPVLISE+TVKAM
Sbjct: 220 EKEIAQGVGGYARPMPPDWMKRQAELVHERAKQADIIITTALIPGRKAPVLISEDTVKAM 279

Query: 118 KPGSVILDMAVDQGGNCPLSEPGKTVIRHGVHIIGEGNLAALVAADASALYSRNVLDFLK 177
           KPGSVILDMAVDQGGNCPLSEPGKTVI+HGVHIIGEGNLAALVAADASALY+RNVLDFLK
Sbjct: 280 KPGSVILDMAVDQGGNCPLSEPGKTVIKHGVHIIGEGNLAALVAADASALYARNVLDFLK 339

Query: 178 LIVDAEGKLVINREDDIVAATLLCSGGEVLRK 209
           LI+DAEGKLVINREDDIVAATLLC GGE+LRK
Sbjct: 340 LIIDAEGKLVINREDDIVAATLLCQGGEILRK 371



 Score = 94.7 bits (234), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 1  MRLGIPVESRDGETRVAATPETVKKLVAAKHEVLVESGAGIKSSITDEAYVAAGA 55
          MR+GIP ESRDGETRVAATPETVKKLVAAKHEV+V+S AG+KSSI DEA+VA GA
Sbjct: 1  MRIGIPAESRDGETRVAATPETVKKLVAAKHEVMVQSAAGLKSSIPDEAFVAVGA 55


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 632,542
Number of extensions: 24173
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)