BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0030.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310034|ref|YP_003774126.1| transmembrane NAD(P) transhydro...   351   4e-98

>gi|300310034|ref|YP_003774126.1| transmembrane NAD(P)
           transhydrogenase subunit beta [Herbaspirillum
           seropedicae SmR1]
          Length = 479

 Score =  351 bits (900), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 187/198 (94%), Positives = 193/198 (97%)

Query: 1   MTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGEAIPLGNRVELFIGTFVGAIT 60
           MTKMPELVAAMHSLIGLAAVCIAVAAVAEPWA  I+AHG+ IP+GNRVELFIGTFVGAIT
Sbjct: 91  MTKMPELVAAMHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIGTFVGAIT 150

Query: 61  FSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIGFGVIFVLTQNWLPFIIM 120
           FSGSVIAFGKLSGKYKFRLFQGAPV+F+GQH LNLLLAVAMIGFG+IFVLTQNWLPFIIM
Sbjct: 151 FSGSVIAFGKLSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQNWLPFIIM 210

Query: 121 AAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAI 180
           AAIAF LGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAI
Sbjct: 211 AAIAFALGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAI 270

Query: 181 LSYIMCKAMNRSFFNVIL 198
           LSYIMCKAMNRSFFNVIL
Sbjct: 271 LSYIMCKAMNRSFFNVIL 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 569,341
Number of extensions: 20428
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)