BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0019.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...   543   e-155
gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...    62   1e-10

>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  543 bits (1398), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/398 (72%), Positives = 333/398 (83%), Gaps = 28/398 (7%)

Query: 1   VITRQELNERLASVQKRLTAQGVALPPRNQLQSQLLERMIVERAQTQMAKENGIVVDDAM 60
           VITRQE+ +RLASV KR++AQ V LPPR+QL  QL+ERMIVERAQ QMAKENGIVVDDAM
Sbjct: 100 VITRQEVADRLASVVKRMSAQNVQLPPRDQLVRQLVERMIVERAQAQMAKENGIVVDDAM 159

Query: 61  LDRAILRIAEQNKLSVADFRVQLEREGMAYPAFREDIRREIIMQRLREREVDNKVLVSES 120
           LDRA+ RIA+QNKLS+A FR +LE EGM Y +FRE+IRREI+ QRLREREVDNKV+V+ES
Sbjct: 160 LDRAMQRIADQNKLSMAQFRTRLEAEGMNYASFREEIRREILSQRLREREVDNKVVVTES 219

Query: 121 EVDNYLAAENNTSVKHEDLNLAQI---------------------------XWGADFAKT 153
           EVDNYLAAE N   + ++L++AQI                             GADFAKT
Sbjct: 220 EVDNYLAAEANAGGQRQELDIAQILIRVPENATPDQLAQRRERAEDVLRQLKTGADFAKT 279

Query: 154 AATYSDSSDALSGGELGWRGQDRLPQLFLDAVASLKPGEVSAILKSGNGFHIVKLIDRRN 213
           AA YSD+SDALSGG+LGWR  DRLPQLFLD VA L+ G+VS +LKSGNGFHI+KL+ RR 
Sbjct: 280 AAAYSDASDALSGGDLGWRPADRLPQLFLDGVAKLQDGQVSGLLKSGNGFHILKLVGRR- 338

Query: 214 TSNTAKAGAPAVEQTHARHILIKVNQVVSAAEARRKLLELKERLDHKAATFEELAKLYSN 273
           T++ A+A APAV+QTH RHILIKVNQVV+AAEA+RKL ELKERLDH +ATFEELAKLYSN
Sbjct: 339 TADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSN 398

Query: 274 DLSASKGGDLGWIYPGDTVPEFERAMNELKPGEISQPIESPFGFHLIQVVERKTDDGSQE 333
           DLSASKGGDLGW+YPGDTVPEFERAM++LKPGE+SQPIE+PFG+HLIQVVERKTDD S+E
Sbjct: 399 DLSASKGGDLGWVYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKE 458

Query: 334 RARLAARQAIRERKIDEATEDWLRQLRDRAYVEFRTDD 371
           RAR AARQAIRERKIDEATEDW+RQ+RDRAYVE+R D+
Sbjct: 459 RARQAARQAIRERKIDEATEDWMRQIRDRAYVEYRNDE 496


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 16/143 (11%)

Query: 226 EQTHARHILIKVNQVVSAAEARRKLLELKERLDHKAATFEELAKLYSNDLSASKGGDLGW 285
           ++ HARHIL+   +   A  A+ K              FE+LAK   +  SA+ GGDL W
Sbjct: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179

Query: 286 IYPGDTVPEFERAMNELKPGEIS-QPIESPFGFHLIQVVE-RKTDDGSQERARLAARQAI 343
             P   V  F  AM  LK GE++  P+++ FG+H+I++ + R     + +  +    +A+
Sbjct: 180 ATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239

Query: 344 RERKIDEATEDWLRQLRDRAYVE 366
           +++K+    + +  QLR +A V+
Sbjct: 240 QQKKL----QAYQEQLRAKAKVQ 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,020,737
Number of extensions: 39057
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 3
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)