BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0017.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate ...   351   2e-98

>gi|300310042|ref|YP_003774134.1| 4-hydroxythreonine-4-phosphate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  351 bits (901), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 190/225 (84%)

Query: 7   SNSTATWWRACRSSSIRKNAGVPFTGHTEYLAERTATPQVVMMLAGGDAPHLRVALATTH 66
           S + A    A    S   +AGV FTGHTEYLAE T TPQVVMMLAGG +PHLRVALATTH
Sbjct: 114 SGAFAAIVTAPLQKSTINDAGVAFTGHTEYLAEVTHTPQVVMMLAGGQSPHLRVALATTH 173

Query: 67  LALKDVSAAITFDGLGRTLDIIHADLRDKFGIARPRILVTGLNPHAGENGYLGREEIDVI 126
           LALKDV AAIT D L RTLDI+HADLR KFGIARPRILVTGLNPHAGENGYLGREEI+VI
Sbjct: 174 LALKDVPAAITADSLARTLDILHADLRSKFGIARPRILVTGLNPHAGENGYLGREEIEVI 233

Query: 127 SPALAAAKARGIDVAGPYPADTLFQHKYLEHADCVLAMYHDQGLPVLKFASFGQGVNITL 186
           SPAL AA+ARGID  GPYPADTLFQ KYLE ADCVLAMYHDQGLPVLKFASFG G+NITL
Sbjct: 234 SPALEAARARGIDARGPYPADTLFQPKYLEDADCVLAMYHDQGLPVLKFASFGHGINITL 293

Query: 187 GLPIIRTSVDHGTALDLAAQGLGRADHGSMVEAIRTAALMARAKN 231
           GLP+IRTSVDHGTALDLAA GLG ADHGSM+ A+R AA MAR + 
Sbjct: 294 GLPLIRTSVDHGTALDLAAAGLGHADHGSMLVAVRAAADMARRQK 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 780,937
Number of extensions: 35322
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)