BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0221.0013.p (314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 236 2e-63 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 196 3e-51 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 162 5e-41 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 161 8e-41 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 138 5e-34 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/272 (49%), Positives = 184/272 (67%) Query: 1 MRIANFKIGARLSIGFGFLVLLLVSMAVLGITRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+++N I RL +GFG L++L+++MA GI RL LN QM +VI+DKYPKTV+A DI+ Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 NVNVIARSSRNVLLMTDADEVGKEMQTIRTASDHTKTTLEKLDSLITGDKGRALMKAIMD 120 +N+IARS RN+LL+ ++ E + I A + L +LD L+T RA + ++ Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 ARTQYNVGRDEVLRLVTAGAKNEATLLLLQTVRPLQLTYMSAVETLIAHQNELMHVASKE 180 A+ Y RD+VL +V G K A +L+ VRP+Q M+A + LI Q+E+M A E Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 VEEEYVEARNLVIMLSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 VE Y +AR L+++L+ L A +IAW++TRSIT+PL RAV+VAETVAAGDLTS DA Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 GKDETAQLLRALRAMNDNLLDIVSRVRHGTDT 272 G+DET+ LLRAL+ MND LLDIVS+VR TDT Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDT 272 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 196 bits (497), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/272 (39%), Positives = 160/272 (58%) Query: 1 MRIANFKIGARLSIGFGFLVLLLVSMAVLGITRLSGLNEQMDEVINDKYPKTVLANDIIK 60 MR N I RL+I F L+L++ + LG+ RL+ +N+ +D V+ND+Y K + N I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NVNVIARSSRNVLLMTDADEVGKEMQTIRTASDHTKTTLEKLDSLITGDKGRALMKAIMD 120 V+ +A S RN LLMTD ++ E +TI + S ++L L+ + +A + + + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARTQYNVGRDEVLRLVTAGAKNEATLLLLQTVRPLQLTYMSAVETLIAHQNELMHVASKE 180 R Y R ++ +L ++G K+ A L+L + PLQ Y S ++ L Q +LM + + Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 VEEEYVEARNLVIMLSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 E Y R ++++ V+A FA IAW ++RSIT PLSRAV+VAETVAAGDLT+ A Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 GKDETAQLLRALRAMNDNLLDIVSRVRHGTDT 272 DET +LL+AL AMN L IV VR GTD+ Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDS 272 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 162 bits (409), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 108/280 (38%), Positives = 164/280 (58%), Gaps = 4/280 (1%) Query: 1 MRIANFKIGARLSIGFGFLVLLLVSMAVLGITRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M++ + KI RL++ F L+ ++ + +G+ LS +++ ++ D+Y K LA +I Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNVIARSSRNVLLMTDADEVGKEMQTIRTASDHTKTT--LEKLDSLITGDKGRALMKAI 118 NVN AR+ RN LL + +E + + R+A++ KTT L K++ +++ +GR L ++I Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLD--RSAANSAKTTEALGKMEKILSTARGRELFQSI 118 Query: 119 MDARTQYNVGRDEVLRLVTAGAKNEATLLLLQTVRPLQLTYMSAVETLIAHQNELMHVAS 178 +AR+ YN RD++ L+ K EA LL V P Q Y ++ +A Q LM + Sbjct: 119 QEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSV 178 Query: 179 KEVEEEYVEARNLVIMLSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFD 238 E + A +++ LS +A+ + AWLVTRSIT PL+ AV VA VAAGDLT Q Sbjct: 179 TEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIG 238 Query: 239 ASGKDETAQLLRALRAMNDNLLDIVSRVRHGTDTXRRAVA 278 A+ KDET LL AL++MND+L IVS VR G+DT A A Sbjct: 239 ATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASA 278 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 161 bits (407), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 165/283 (58%), Gaps = 3/283 (1%) Query: 1 MRIANFKIGARLSIGFGFLVLLLVSMAVLGITRLSGLNEQMDEVINDKYPKTVLANDIIK 60 M+I++ KI RL F L++++ +A +G+ L +++ DE++ND+Y K L I Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNVIARSSRNVLLMTDADEVGKEMQTIRTASDHTKTTLEKLDSLITGDKGRALMKAIMD 120 VN ARS RN ++ + +E K + + T + L +++ +G L+ A+ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARTQYNVGRDEVLRLVTAGAKNEATLLLLQTVRPLQLTYMSAVETLIAHQNELMHVASKE 180 AR Y+ R +V+ L+ ++EAT L P+Q Y +AV+ +++ Q+ LM +++ Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 VEEEYVEARNLVIMLSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDAS 240 A N++++LS +A++ + L A L+TRSIT PL+ AV+VA VAAGDLT Q +A+ Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 GKDETAQLLRALRAMNDNLLDIVSRVRHGTD---TXRRAVAAG 280 KDET LL AL++MNDNL IV+ VR GTD T R +A G Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATG 284 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 138 bits (348), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 147/271 (54%), Gaps = 5/271 (1%) Query: 5 NFKIGARLSIGFGFLVLLLVSMAVLGITRLSGLNEQMDEVINDKYPKTVLANDIIKNVNV 64 N K+ RL+ F F+V LL ++V +++ +N +D+++ND+Y K A D+ VN Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 65 IARSSRNVLLMTD---ADEVGKEMQTIRTASDHTKTTLEKLDSLITGDKGRALMKAIMDA 121 + R + + + A+E K + A TK L+K+ + G+ KA+ +A Sbjct: 67 QIKYLRGIAIDIENRPANE--KRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124 Query: 122 RTQYNVGRDEVLRLVTAGAKNEATLLLLQTVRPLQLTYMSAVETLIAHQNELMHVASKEV 181 R ++ + + L LV AG A +L+ + Q Y++ Q+ + + Sbjct: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184 Query: 182 EEEYVEARNLVIMLSVIALVFAGLIAWLVTRSITSPLSRAVKVAETVAAGDLTSQFDASG 241 + A + + S+ A++ A ++ +L+ RSI PL+ AV+VAE VAAGDLT++ + Sbjct: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244 Query: 242 KDETAQLLRALRAMNDNLLDIVSRVRHGTDT 272 +DET QL++ALR MNDNL++IVS VR GT++ Sbjct: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTES 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 790,444 Number of extensions: 28034 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 45 Length of query: 314 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,217,395 Effective search space: 278783455 Effective search space used: 278783455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)