BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0007.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta cha...   551   e-158

>gi|300310051|ref|YP_003774143.1| glycyl-tRNA synthetase beta chain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score =  551 bits (1421), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/328 (81%), Positives = 290/328 (88%)

Query: 1   LQAALEESVAKLPIPKLMSYQRQHGRDAGNTVHFVRPAHRLIALHGASVVPLNILGLDAD 60
           LQAAL+ES++KLPIPK+MSYQRQ GR AG TVHFVRPAH L+AL G  VVP+N LGLDA 
Sbjct: 139 LQAALDESLSKLPIPKVMSYQRQFGRAAGETVHFVRPAHYLVALLGNDVVPINTLGLDAG 198

Query: 61  KITQGHRFLSQGAIAVDSPEAYVETLISKGKVIPGFTERKEKIRLDLLGKAGDDKVLMPE 120
           + T GHRFLS GA+ + +P+AYVE+L  +G VI  FTER+EKIR  LL KAG D+VLMPE
Sbjct: 199 RTTLGHRFLSAGALQIAAPDAYVESLAQQGNVIASFTERREKIRAALLAKAGADQVLMPE 258

Query: 121 ALLDEVTALVEWPVVYECKFDDQFLAVPQECLILTMQTNQKYFALTDANGKLRSRFLIVS 180
           ALLDEVTALVEWPVVYECKF+D+FLAVPQECLILTMQTNQKYFALTDANG+LRSRFLIVS
Sbjct: 259 ALLDEVTALVEWPVVYECKFEDEFLAVPQECLILTMQTNQKYFALTDANGRLRSRFLIVS 318

Query: 181 NLETSNPQHIIQGNERVVRPRLSDAKFFFEQDKKKSLADRVPLLANVVYHNKLGNQLQRT 240
           NLET++P+HII GNERVVRPRLSDAKFFFEQDKKK+LA+RVP LANVVYHNKLGNQLQRT
Sbjct: 319 NLETAHPEHIIGGNERVVRPRLSDAKFFFEQDKKKTLAERVPQLANVVYHNKLGNQLQRT 378

Query: 241 ERVQALAGAIAKLLGNDVALAERGALLAKTDLLTDMVGEFPELQGIMGAYYARHDGEPDE 300
           ERVQALAG IA LLG DV LAERGALLAK DLLTDMVGEFPELQGIMG YYARHDGE DE
Sbjct: 379 ERVQALAGKIASLLGGDVKLAERGALLAKADLLTDMVGEFPELQGIMGTYYARHDGEADE 438

Query: 301 VALAASEHYQPRFAGDALPREGRGPRIA 328
           VALAASEHYQPRFAGDALP    G  +A
Sbjct: 439 VALAASEHYQPRFAGDALPTTATGTAVA 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,118,637
Number of extensions: 48673
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)