BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0005.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310052|ref|YP_003774144.1| glycyl-tRNA synthetase subunit ...   186   6e-49
gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferas...    79   1e-16

>gi|300310052|ref|YP_003774144.1| glycyl-tRNA synthetase subunit
           alpha [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  186 bits (473), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 87/90 (96%), Positives = 88/90 (97%)

Query: 44  ENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGIERLAMYLQNVENVY 103
           ENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGIERLAMYLQ VENVY
Sbjct: 117 ENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCKPVLGEITYGIERLAMYLQGVENVY 176

Query: 104 DLVWTEWVENGVKKKLTYGDVFHQNEVEQS 133
           DLVWTEW+ENGVKK LTYGDVFHQNEVEQS
Sbjct: 177 DLVWTEWMENGVKKHLTYGDVFHQNEVEQS 206


>gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score = 79.3 bits (194), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 1   MMNIPLGDMTRGKPLQLPFQVKQQWIMPNICYEDLFGEEIAG 42
           MM+IPLGDMTRG P+Q PF VK QW++PNICYEDLFGEEIAG
Sbjct: 379 MMHIPLGDMTRGAPVQSPFGVKDQWVLPNICYEDLFGEEIAG 420


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 593,004
Number of extensions: 22296
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)