BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0004.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferas...   105   2e-24

>gi|300310053|ref|YP_003774145.1| apolipoprotein N-acyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  105 bits (262), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 55/78 (70%), Gaps = 2/78 (2%)

Query: 34  LFALLAGVANVLAFAPFNIWPVQILTLAWLFRQI--SRTSSFRRNALTGWLYGFGWAACG 91
           L  + AG  NV AFAPF +WP+QIL LAWLF  +     +S R   L GWLYGFGWAA G
Sbjct: 29  LMPVAAGAINVFAFAPFKLWPLQILALAWLFHGVLAQPQASMRSQFLRGWLYGFGWAAAG 88

Query: 92  VHWLYISMHDYGGMAGWM 109
           VHWLYISMHDYGGM  WM
Sbjct: 89  VHWLYISMHDYGGMPAWM 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.130    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,111
Number of extensions: 7776
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)