BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0003.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310054|ref|YP_003774146.1| Mg2+ and Co2+ transporter prote...   163   7e-42

>gi|300310054|ref|YP_003774146.1| Mg2+ and Co2+ transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  163 bits (412), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/86 (93%), Positives = 84/86 (97%)

Query: 1   LLEVLQDAHARNLIDADALSMIEGVFQVSDLAVRDIMVPRSQMDTIDISKPIETWMPDVL 60
           LLEVL DAH RNLIDADALSMIEGVFQVSDLAVRDIMVPRSQMDTIDISKPIETWMP+VL
Sbjct: 36  LLEVLHDAHERNLIDADALSMIEGVFQVSDLAVRDIMVPRSQMDTIDISKPIETWMPEVL 95

Query: 61  STSHSRFPAVEGERDKVVGVLLAKDL 86
           +TSHSRFPAV+GERDKVVG+LLAKDL
Sbjct: 96  ATSHSRFPAVDGERDKVVGILLAKDL 121



 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 62/71 (87%)

Query: 88  IAQFNETLETAFSDEDADTIGGLVANHLGRVPRKGDEFDIDGMRFEVLRADARQAHVLLV 147
           I QFNE + + FSD+DADTIGGLVANH+GRVPRKGDEFDIDG+ FEVLRADARQ HVLLV
Sbjct: 222 IEQFNEEVGSRFSDDDADTIGGLVANHVGRVPRKGDEFDIDGLHFEVLRADARQVHVLLV 281

Query: 148 EKLPDTPAAEE 158
            +LP  PA++E
Sbjct: 282 SQLPPAPASDE 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 476,390
Number of extensions: 17910
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)