BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0221.0001.p
         (128 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   124   3e-30

>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  124 bits (310), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 74/97 (76%)

Query: 1   MLTKISRMNDGVQAWLFDPNKLAPTYPASMITRPFPFNAFYGEDEITEVDGDAYRLELNG 60
           +L  +SR ND VQA LF  +KLAPTY AS IT PFPFNAFY E    ++DG  ++LE++G
Sbjct: 59  VLWAMSRWNDRVQALLFRSHKLAPTYAASQITHPFPFNAFYDEFNAPDIDGSDWKLEVSG 118

Query: 61  LIAIRRAWSLAELRRLPQVEQITRHICVEGWSAIGRF 97
           L++ +R+W+L  LR LPQ  QITRHIC+EGWSAIG++
Sbjct: 119 LVSDKRSWTLERLRALPQAGQITRHICIEGWSAIGQW 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 410,921
Number of extensions: 15475
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,264,745
Effective search space: 67031485
Effective search space used: 67031485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)