BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0220.0009.p
         (77 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310488|ref|YP_003774580.1| LacI family transcription regul...   116   3e-28
gi|300311238|ref|YP_003775330.1| LacI family transcription regul...    67   3e-13
gi|300310423|ref|YP_003774515.1| GntR family transcription regul...    54   2e-09

>gi|300310488|ref|YP_003774580.1| LacI family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  116 bits (291), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 65/76 (85%)

Query: 1   MIEAQVRGIAIPSQLAVMGFGDLSFSRDLHPQLTTVRIDGTGIGKTAARFIIERAEGREV 60
           MIEAQ RGIAIP QLAV+GFGDL FSRDL P+LTTVRIDGTGIG+ AARFII+RA G EV
Sbjct: 289 MIEAQSRGIAIPEQLAVVGFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEV 348

Query: 61  PERVHDIGFTIIERQS 76
            ERV D+GF+II R S
Sbjct: 349 AERVVDVGFSIIARDS 364


>gi|300311238|ref|YP_003775330.1| LacI family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score = 67.0 bits (162), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 2   IEAQVRGIAIPSQLAVMGFGDLSFSRDLHPQLTTVRIDGTGIGKTAARFIIERAEGREVP 61
           +E   RGIA+P ++A+ GF +L  + ++ P LTTV+I    IG TAA  ++ R +G  + 
Sbjct: 265 LECARRGIAVPGRIALAGFANLEIATEVLPALTTVQISAHQIGLTAAEMLLTRFDGDPLD 324

Query: 62  ERVHDIGFTIIERQS 76
           + VHD+G++I+ER S
Sbjct: 325 QAVHDLGYSILERDS 339


>gi|300310423|ref|YP_003774515.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query: 1   MIEAQVRGIAIPSQLAVMGFGDLSFSRDLHPQLTTVRIDGTGIGKTAARFIIERAEGREV 60
           + E Q +GI++P Q+A+ GF DLS++    P +TTV      IG  +A  ++ + +G E+
Sbjct: 276 LFECQRQGISVPRQMAIAGFNDLSWAACATPSITTVVTPRYDIGYQSAEMLVRQLKGEEI 335

Query: 61  PERVHDIGFTIIERQSV 77
            +   D+GF +  R+S 
Sbjct: 336 AKGRLDLGFELAVREST 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 242,320
Number of extensions: 8776
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 1,619,870
Length adjustment: 48
Effective length of query: 29
Effective length of database: 1,392,590
Effective search space: 40385110
Effective search space used: 40385110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)