BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0220.0002.p
         (108 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D...    54   3e-09

>gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory
           DNA-binding transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 6/106 (5%)

Query: 2   VARLARLEKNQIIVGYTVKLGQEVMDSGLRAYVGITVEAKTARDVLKRFRR----IPEIE 57
           + R+ R+E++ +I GY  ++  E + + L  +V IT+  K+  ++ ++FRR    IPE++
Sbjct: 45  IERVRRMERDGVITGYYARVNPESLGATLLVFVEITLNHKSG-NMFEQFRREVLRIPEVQ 103

Query: 58  QLCSVSGEFDYVAWLRASSAEQLDKLLDEI-GEIDGVIKTTTSIVL 102
           +   VSG+FDY+   R     +  KLL +I  ++ G  ++ + +V+
Sbjct: 104 ECHLVSGDFDYLIKARIRGMAEYRKLLGDILLQLPGAAQSKSYVVM 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 297,481
Number of extensions: 10226
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 36
Effective length of database: 1,278,950
Effective search space: 46042200
Effective search space used: 46042200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)