BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0219.0001.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311817|ref|YP_003775909.1| glycogen debranching enzyme pro...   666   0.0  

>gi|300311817|ref|YP_003775909.1| glycogen debranching enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/418 (74%), Positives = 353/418 (84%)

Query: 1   VTTVELMPVHAFLQENFLLQRDLRNYWGYSTLGFFAPEPNYLSTGDLNELRMAVRHFHAA 60
           VTT+ELMPVHAFLQ++FL++R L NYWGYSTL +FAPEP YLS GD NELRMAVR  H+A
Sbjct: 207 VTTLELMPVHAFLQDSFLVERGLHNYWGYSTLSYFAPEPGYLSMGDPNELRMAVRRLHSA 266

Query: 61  GIEVILDVVYNHTCSGSELGPTLSMRGLDNANYYRLLPGEERYYINDTGCGNTVNMSHPR 120
           GIEVILDVVYNHT  GSELGPTLS RGLDNA+Y+RLLPG+ERY+INDTGCGNT+N+SHPR
Sbjct: 267 GIEVILDVVYNHTSCGSELGPTLSFRGLDNASYFRLLPGQERYHINDTGCGNTLNLSHPR 326

Query: 121 VIQLVLDSLRYWAEAFDIDGFRFDLCTTLGREPTGFDPGSGFFDALMQDPVLSQLKLIAE 180
           V+Q+VLDSLRYWA++F IDGFRFDL +TLGREP GFDPGSGFFDAL+QDPVLS+LKLI+E
Sbjct: 327 VLQMVLDSLRYWAQSFHIDGFRFDLGSTLGREPHGFDPGSGFFDALLQDPVLSRLKLISE 386

Query: 181 PWDIGPGGYQLGNHPPRFAEWNDKFRDAVRHFWAGGEGLRGEFAGRMLGSSDLFDHHHRK 240
           PWDIGPGGYQLGNHP RF EWNDKFRD +R FW G E +RG FA RM+GS++LF+HH RK
Sbjct: 387 PWDIGPGGYQLGNHPARFGEWNDKFRDDMRKFWKGDEAMRGAFAQRMMGSAELFEHHRRK 446

Query: 241 PWSSVNFIASHDGFTLRDLVSYETKHNEANGENGNDGHNENYSANWGVEGPTDDPEILQL 300
           PW+S+NFIASHDGFTLRDLVSY  KHNEANGEN NDGHN+N S NWG EG TDD  IL  
Sbjct: 447 PWASINFIASHDGFTLRDLVSYNGKHNEANGENNNDGHNDNASYNWGAEGDTDDAAILAK 506

Query: 301 RATVQRSMLTCVFLGQGTPMLLAGDEFHRTQRGNNNAYCQDNEISWVNWKDAATQEGQAL 360
           RA VQR+ML    L QGTPMLLAGDEFHR+Q GNNNAYCQDNEISWVNW  A + EG AL
Sbjct: 507 RACVQRAMLASTLLAQGTPMLLAGDEFHRSQGGNNNAYCQDNEISWVNWDQARSPEGAAL 566

Query: 361 ISYVARLTAIRRDFPVLQGDRFLHGNTEIEPGLKDVAWFDERATPISVEDWQNPRGRG 418
            ++V R+TAIRRDF VL+   FLHG+  +  GL DVAWFDE A P+S EDW NP  R 
Sbjct: 567 SAFVGRVTAIRRDFEVLRASYFLHGSQMVADGLPDVAWFDEAARPVSSEDWNNPVARA 624


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,565,702
Number of extensions: 71097
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)