BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0024.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...   359   e-100
gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...    75   5e-15

>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/224 (73%), Positives = 189/224 (84%)

Query: 20  LSATAHAAGYPQQREADWIAPSFTFHTGETLNNFKLHYITVGDPANPAVLLLHGTYRSGA 79
            SA   AA  P+  E DW+AP F FHTG+TL N +LHY+T+GD ANPAVL+LHGTY+S  
Sbjct: 23  CSAATQAADPPRPVEGDWVAPRFQFHTGQTLENLRLHYVTLGDRANPAVLVLHGTYQSAQ 82

Query: 80  DMVGKDFAGEMLGPGQPLDASKYYLIMPDAIGAGKSAKPSDGLRAKFPQYNYADMVLAQY 139
            M+ KDF G++ GPGQPLDASKY++I+PD IG GKS+KPSDGLRA FPQYNYADMVLAQY
Sbjct: 83  AMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSSKPSDGLRAAFPQYNYADMVLAQY 142

Query: 140 RLVTEGLGIKHLRLVMGNSMGGMQTWMWGETYPAMMDALVPMASQPIEMASRNWMMRRVL 199
           R++TEG+GI HLRL++GNSMGGMQTW+WG TYP   D LVPMASQP EMASRNWMMRR+L
Sbjct: 143 RMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFADGLVPMASQPTEMASRNWMMRRML 202

Query: 200 VESIKQDPAWNGGNYSTQPPSLRLANTMFGIATAGGTLAYQALA 243
           VESIKQDPAWN GNY+TQPPSLRLAN MF  AT GGTLAYQA+A
Sbjct: 203 VESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTLAYQAMA 246


>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 21/218 (9%)

Query: 5   LTLGIVAPLLLSSSLLSATAHAAGYPQQREADWIAPSFTFHTGETLNNFKLHYITVGDPA 64
           +++GIV+P ++          A   P Q  +     S T+ T  TLN  K + + V    
Sbjct: 1   MSIGIVSPQVMH--------FAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHAL 52

Query: 65  NPAVLLLHGTYRSGADMVGKDFAGEMLGPGQPLDASKYYLIMPDAIGAG------KSAKP 118
           N A   + G Y    D VG  +   M+GPG+ LD  ++++I  + +G+         A P
Sbjct: 53  N-ASHHVAGVYADDPDNVG--WWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANP 109

Query: 119 SDG--LRAKFPQYNYADMVLAQYRLVTEGLGIKHLRLVMGNSMGGMQTWMWGETYPAMMD 176
           + G    A FP     D V AQ RL  + LGI     VMG S+GGMQ   W   YP  + 
Sbjct: 110 ATGKPYGADFPVVTVEDWVNAQARL-ADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLR 168

Query: 177 ALVPMASQPIEMASRNWMMRRVLVESIKQDPAWNGGNY 214
             + +AS P +++++N     V  ++I  DP ++GG++
Sbjct: 169 HCLVIASTP-KLSAQNIAFNDVARQAILTDPQYHGGDF 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 946,536
Number of extensions: 41961
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)