BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0020.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC t...   175   2e-45
gi|300312236|ref|YP_003776328.1| amino acid ABC transporter peri...    61   3e-11
gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC t...    58   2e-10

>gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC
          transporter periplasmic protein [Herbaspirillum
          seropedicae SmR1]
          Length = 383

 Score =  175 bits (443), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 93/98 (94%)

Query: 1  MTYKTQALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGASMRDGVKLAVADINASG 60
          MTYKTQA VAAAL+SL+L+SQAADPIKIGVSGP+TGGSAPMG SMRDGVKLAVA+INA+G
Sbjct: 1  MTYKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60

Query: 61 GVLGRQLQLVERDDEAKNERGVQVAQELINKEKVXVQV 98
          G+LGRQ+QL+ERDDEAKNERGVQ+AQELINKEKV   V
Sbjct: 61 GLLGRQIQLIERDDEAKNERGVQIAQELINKEKVVATV 98


>gi|300312236|ref|YP_003776328.1| amino acid ABC transporter
          periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score = 61.2 bits (147), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 1  MTYKTQALVAAALL---SLSLSSQAADPIKIGVSGPFTGGSAPMGASMRDGVKLAVADIN 57
          M + T      ALL   +LS ++ AAD IK+GV+   TG +A  G ++++G  LA  +IN
Sbjct: 1  MQFNTMLKTIPALLIGATLSQAALAAD-IKLGVAEALTGPAAKYGVAIKNGFTLASEEIN 59

Query: 58 ASGGVLGRQLQLVERDDEAKNERGVQVAQELINKEKV 94
          A GGV G +L LV  D++ K E  + V ++LI ++KV
Sbjct: 60 AKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKV 96


>gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 17  SLSSQAADPIKIGVSGPFTGGSAPMGASMRDGVKLAVADINASGGVLGRQLQLVERDDEA 76
           S++++A D I+IG    +    A +    R G ++A+ +INASGGVLG++L+++ RDD  
Sbjct: 23  SVAARAQDTIRIGEINSYKAQPAFL-EPYRRGWEMALDEINASGGVLGKKLEVIARDDNG 81

Query: 77  KNERGVQVAQELINKEKVXVQVAQELIATFLSGSQDS-CDQQRCHR 121
                V+VA+EL+ +E+V +     L   FLS +  +  D  + HR
Sbjct: 82  NPGDSVRVAEELMARERVAL-----LFGGFLSNTGLALTDYAKQHR 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 365,797
Number of extensions: 12893
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)