BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0018.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC t...   301   3e-83
gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC t...    83   1e-17
gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC t...    83   1e-17

>gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  301 bits (770), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 1   MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60
           MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG
Sbjct: 1   MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60

Query: 61  PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120
           PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG
Sbjct: 61  PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120

Query: 121 KDDLPFPSPLSGAPFQILGANVQPMQVLVVVG 152
           KDDLPFPSP+SGAPFQI GANVQPMQVLVVVG
Sbjct: 121 KDDLPFPSPISGAPFQIFGANVQPMQVLVVVG 152


>gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 82.8 bits (203), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 14/159 (8%)

Query: 1   MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIH-- 58
           MDI +Q + +G+ LG +YA+IA GY + +     +NF  G+ LM+GA+VGLS++  +   
Sbjct: 1   MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60

Query: 59  --GGPYLNYWLM-----IPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIF 111
             G P +   ++     IP+ +V      + +E I  RP ++       +++ I ++I+ 
Sbjct: 61  APGLPGIVQLVIAIVGAIPVCIVV----SLLIERIAYRP-LRNAPRLAPLITAIGVSILL 115

Query: 112 KNVAENIWGKDDLPFPSPLSGAPFQILGANVQPMQVLVV 150
           + +A  IWG+  LPFP  +   P  I GA + P Q++++
Sbjct: 116 QTLAMMIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLL 154


>gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 82.8 bits (203), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 14/159 (8%)

Query: 1   MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIH-- 58
           MDI +Q + +G+ LG +YA+IA GY + +     +NF  G+ LM+GA+VGLS++  +   
Sbjct: 1   MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60

Query: 59  --GGPYLNYWLM-----IPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIF 111
             G P +   ++     IP+ +V      + +E I  RP ++       +++ I ++I+ 
Sbjct: 61  APGLPGIVQLVIAIVGAIPVCIVV----SLLIERIAYRP-LRNAPRLAPLITAIGVSILL 115

Query: 112 KNVAENIWGKDDLPFPSPLSGAPFQILGANVQPMQVLVV 150
           + +A  IWG+  LPFP  +   P  I GA + P Q++++
Sbjct: 116 QTLAMMIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 630,909
Number of extensions: 28311
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 9
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)