BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0017.p
         (75 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC t...   120   2e-29
gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr...    60   4e-11
gi|300312237|ref|YP_003776329.1| amino acid ABC transporter perm...    59   9e-11

>gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  120 bits (301), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 75/75 (100%)

Query: 1   MGAALGLKAFAVAIIGGLTSGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLA 60
           MGAALGLKAFAVAIIGGLTSGMGAIVGGLILG+AET+TGFYISTGYKEVPGL+LLLLVLA
Sbjct: 222 MGAALGLKAFAVAIIGGLTSGMGAIVGGLILGVAETLTGFYISTGYKEVPGLVLLLLVLA 281

Query: 61  VKPAGLFGKTAIKKV 75
           VKPAGLFGKTAIKKV
Sbjct: 282 VKPAGLFGKTAIKKV 296


>gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 59.7 bits (143), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 49/70 (70%)

Query: 6   GLKAFAVAIIGGLTSGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLAVKPAG 65
           G+KAF  A++GG+ S  GA++GG++LG+AET    Y+ + YK+V    LL+L+L  +P G
Sbjct: 239 GIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTG 298

Query: 66  LFGKTAIKKV 75
           L GK  ++KV
Sbjct: 299 LLGKPDVEKV 308


>gi|300312237|ref|YP_003776329.1| amino acid ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score = 58.5 bits (140), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query: 1   MGAALGLKAFAVAIIGGLTSGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLA 60
           MG  +  K  AV I+GG+    GA++GGL LG AE +T  YIS+ +++     LL L+L 
Sbjct: 219 MGQPMLHKGIAVIILGGMGDIRGAMIGGLFLGFAEVLTVAYISSDFRDAVAFGLLFLILL 278

Query: 61  VKPAGLFGKTAIKK 74
           VKP+G+FGK   +K
Sbjct: 279 VKPSGMFGKVLERK 292


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.146    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 118,474
Number of extensions: 2246
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 75
Length of database: 1,619,870
Length adjustment: 46
Effective length of query: 29
Effective length of database: 1,402,060
Effective search space: 40659740
Effective search space used: 40659740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)