BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0016.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t...   140   2e-35

>gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 655

 Score =  140 bits (353), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 2/102 (1%)

Query: 3   MNKKILFISVLGIAALAALPLVVRNPYYLHLAETILIYAILLFGLDIVVGYTGQVSLGHA 62
           MNKKIL +S+LGI ALA +P+VV NPYYLHL ETILIYAILLFGLDIVVGYTGQVSLGHA
Sbjct: 1   MNKKILLLSLLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHA 60

Query: 63  GLFGIGSYTAGVLYFKLGLPFLLVLPGXFKLGLPF--LLVLP 102
           GLFGIGSY AGVL+FKLG+P  + +P    +   F  +L LP
Sbjct: 61  GLFGIGSYAAGVLFFKLGMPIFVTVPAAIAVTAVFGAILALP 102


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.153    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 249,781
Number of extensions: 7903
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 124 (52.4 bits)