BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0014.p
         (58 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t...    81   1e-17
gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa...    59   8e-11
gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t...    55   9e-10

>gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 81.3 bits (199), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 42/47 (89%)

Query: 1  MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTXVVTLI 47
          MLTISNL AAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKT  +  I
Sbjct: 1  MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAI 47


>gi|300310684|ref|YP_003774776.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 58.9 bits (141), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 2/55 (3%)

Query: 2  LTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTXVVTLIGSNGAVPAR 56
          L + +L AAYGKVEVL GI + V +GK+VT+IG NGAGKT +++ I   G +P+R
Sbjct: 6  LEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAI--MGVLPSR 58


>gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC
          transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score = 55.5 bits (132), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 1  MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTXVV-TLIGSNGAVPAR 56
          ML    +   YG +E LHG+S+ V KG++VTLIG+NGAGKT ++ TL G   A   R
Sbjct: 2  MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGR 58


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 178,936
Number of extensions: 5627
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 5
Length of query: 58
Length of database: 1,619,870
Length adjustment: 31
Effective length of query: 27
Effective length of database: 1,473,085
Effective search space: 39773295
Effective search space used: 39773295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)