BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0218.0012.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312111|ref|YP_003776203.1| LysR family transcription regul...    94   6e-21
gi|300312305|ref|YP_003776397.1| LysR family transcription regul...    83   1e-17

>gi|300312111|ref|YP_003776203.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score = 94.0 bits (232), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 78/155 (50%)

Query: 2   EGNADVGIAPEISSLEGLQTFPYRTLTLAVVMPIGHPLAAHKQIAYVDTLEYEQVELSRA 61
           EG AD+GI       EGLQ   + T  L +   + HPLA    + ++ TLEYE + L   
Sbjct: 140 EGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADAPSLPFIQTLEYEHIGLHEG 199

Query: 62  SAMASLLDHAALNFNQPKHTHIRVISYETICRMVACGMGIGVVPLFFAHSHGQTFGLKFI 121
           S +   L        Q     I+V S+E +CRM+   +GIG++P   A  H QT  L  +
Sbjct: 200 STLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIGILPRSAAQRHQQTMQLSVV 259

Query: 122 PLSDAWARPMICIAVREGAQLTPAAKAFVEHMKQR 156
            LSD W+     + V++   L+P A+  VE ++++
Sbjct: 260 ELSDPWSVRERSMVVQDIDTLSPHARNLVEFIREQ 294


>gi|300312305|ref|YP_003776397.1| LysR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 82.8 bits (203), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 73/137 (53%)

Query: 1   VEGNADVGIAPEISSLEGLQTFPYRTLTLAVVMPIGHPLAAHKQIAYVDTLEYEQVELSR 60
           ++G ADVGI  + +    LQT+P+R   L  V+   HPLA  K +A+ + L  + V LS 
Sbjct: 141 IDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLARRKSLAFAELLGEDFVGLSG 200

Query: 61  ASAMASLLDHAALNFNQPKHTHIRVISYETICRMVACGMGIGVVPLFFAHSHGQTFGLKF 120
            SA+   L   A    +     +R+ S++ ICRMV   +G+ V+P   A +      ++ 
Sbjct: 201 DSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGVAVLPETAALASTPHMDIRA 260

Query: 121 IPLSDAWARPMICIAVR 137
           IPLSD W+R  + I VR
Sbjct: 261 IPLSDGWSRRQLLICVR 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 552,214
Number of extensions: 21349
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)