BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0218.0006.p (373 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 216 3e-57 gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 181 6e-47 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 88 9e-19 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 216 bits (549), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 207/397 (52%), Gaps = 37/397 (9%) Query: 4 PLSGIRVVDLTRILSGPFCTMLLGDMGADVIKIEGPAEGDPIRKAGAGVNGFSWYFASFN 63 PL+GI+V++L +++GPFC+ +L + GADVIK+E P GDP+R+ +G S +++ Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 64 RNKRSMALDLRSDAGKEVLLKLLQSADVLVENFRPGVLAEMGFGEERLKQINPRLVVASI 123 RNK+S+ L+++ + +E+ KL ADV++EN+RPGVL + G E LKQ+NP ++ + Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 124 TGYGSSGPYAERPAFDFVIQAMSGFMSTNGAEDQPPLRCGPPITDLVAGLYAAYGVVNAL 183 +GYG +GP + P F + ++M G +G D+PP+R G I D +A L+ G + AL Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 Query: 184 RARDQS--------------GRGQHVDSA-------MMNGMLSMFAY------------- 209 R RD + G+GQ VD A MM M+ F + Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALP 249 Query: 210 --LTSDYLATGEXRGEIAVAPSTDDILRRLLGLLDLGHLMSDARFNTNKLRMLNRRELNL 267 + S+ TGE I +A + D I +RL+ + + +D N R+ E++ Sbjct: 250 GIVPSNTYTTGEGM-NIVIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDA 308 Query: 268 LLDERFSTDTQASWIQRLNEGGVPCGKVQNVGEALSDPQILHQQMVLEVEHPGRGAVRMV 327 + + ST T + + L VP GK+ +V + ++D Q L + M + + V++ Sbjct: 309 AIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLP 368 Query: 328 GFPVKLSASPCLVRYPAPEHGVHTQEILAELGLTSAR 364 G K+S +P ++ PE G H+ EIL LG A Sbjct: 369 GITPKMSETPGQTKWLGPELGAHSDEILQSLGYDEAH 405 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 181 bits (460), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 200/400 (50%), Gaps = 40/400 (10%) Query: 2 QQPLSGIRVVDLTRILSGPFCTMLLGDMGADVIKIEGPAEGDPIRKAGAGVNGFSWYFAS 61 +PL GI V+ L ++ PFCT L D+GA VIKIE P GD R + VNG S +F Sbjct: 5 HRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVW 64 Query: 62 FNRNKRSMALDLRSDAGKEVLLKLLQSADVLVENFRPGVLAEMGFGEERLKQINPRLVVA 121 NR+K S+ L+L+ + G+ ++ +LLQ ADVLV+N PG A +G + L +PRL+V Sbjct: 65 TNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVC 124 Query: 122 SITGYGSSGPYAERPAFDFVIQAMSGFMSTNGAEDQPPLRCGPPITDLVAGLYAAYGVVN 181 I+GYG GPY ++ A+D +IQ+ +GF+S G D ++ G I D+ AG+YA ++ Sbjct: 125 DISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDD-VVKAGCSIADIAAGMYAYSNILA 183 Query: 182 AL---RARDQSGRGQHVDSAMMNGMLSM------FAYL-TSDYLATGEXRGEIA-VAP-S 229 AL + GRG H+D +M+ + +AY S L +G I P S Sbjct: 184 ALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYGPFS 243 Query: 230 TDDILRRLLGL-------------LDLGHLMSDARFNTNKLRMLNRRELNLLLDERFSTD 276 D +LGL L L SDARF++N R +R L L+ + F+ Sbjct: 244 AGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVFAGL 303 Query: 277 TQASWIQRLNEGGVPCGKVQNVGEALSDPQILHQQMVLEVEHP-GRGAVRMV-----GFP 330 + RL+E + +V + E PQ+ +Q EV P G+ A + + Sbjct: 304 SAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKVAALLPPGANDSYD 363 Query: 331 VKLSASPCLVRYPAPEHGVHTQEILAELGLTSARDADVPE 370 ++ A P L G HT+ IL+ LG + + A + E Sbjct: 364 YRMEAIPAL--------GQHTESILSALGYEAGQIAALRE 395 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 16/148 (10%) Query: 3 QPLSGIRVVDLTRILSGPFCTMLLGDMGADVIKIE--GPAEGDPIRKAGAGVNGFSWYFA 60 +PL GIRV+DLTRIL+GP T L +GA+V++I+ G E + + + G Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLG--------- 256 Query: 61 SFNRNKRSMALDLRSDAGKEVLLKLLQSADVLVENFRPGVLAEMGFGEERLKQINPRLVV 120 KR L+L+ A + L +L+ AD+LV +R LA++G + +++NP L+ Sbjct: 257 -----KRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALID 311 Query: 121 ASITGYGSSGPYAERPAFDFVIQAMSGF 148 S+ YG SG + R FD +IQ +G Sbjct: 312 VSLDAYGWSGAWQCRRGFDSLIQMSTGI 339 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,131,387 Number of extensions: 46837 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 3 Length of query: 373 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 286 Effective length of database: 1,207,925 Effective search space: 345466550 Effective search space used: 345466550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)