BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0002.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   166   2e-42
gi|300311208|ref|YP_003775300.1| molybdopterin-guanine dinucleot...   103   2e-23
gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...    92   4e-20

>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  166 bits (419), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 106/130 (81%), Gaps = 3/130 (2%)

Query: 1   VEKIRLTGGEPLLRKHLERLIGMLHELRTPDGRELDLTLTTNGTLLAQKAQALKNAGLKR 60
           V KIRLTGGEPLLRK++E LIGML  LRTP+   +DLTLTTNGTLL QKAQALK+AGLKR
Sbjct: 118 VRKIRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGLKR 177

Query: 61  VTVSLDALDDANFKRMNDVDVPVSQILHGLDVAHKVGLGPIKINMVVKKGVNDHEILAMA 120
           VTVSLD+LDD  F+RMNDVD PV+++L G+D AH  GLGP+KINMVVKKGVND +IL MA
Sbjct: 178 VTVSLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILPMA 237

Query: 121 RXTDYLAAAP 130
           R   Y    P
Sbjct: 238 R---YFKGTP 244


>gi|300311208|ref|YP_003775300.1| molybdopterin-guanine dinucleotide
           biosynthesis protein A [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 76/109 (69%), Gaps = 2/109 (1%)

Query: 123 TDYLAAAPCDSPLLPMDLVAKLAAALSLQQADAAIAVTGRAGQTDLQRHPVFCLLRKTLL 182
           TD+LA+ PCDSPL+P D+VA+LA AL+  +ADAA+A+T   G    QRHPV  LLR++  
Sbjct: 101 TDFLASTPCDSPLIPYDMVARLATALAEAKADAAVALTD--GAHGRQRHPVCSLLRRSTQ 158

Query: 183 PSLTGFLQEDGRKMERWFAGIHTVEVHFDDETAFCNINTLQELRQLESE 231
            SL  FL    RKM+ WFA +  VEV F DE AFCNINT  EL++LE E
Sbjct: 159 ASLQAFLAAGERKMDHWFATLACVEVEFPDERAFCNINTGLELQRLEEE 207


>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 92.0 bits (227), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 3   KIRLTGGEPLLRKHLERLIGMLHELRTPDGRELDLTLTTNGTLLAQKAQALKNAGLKRVT 62
           ++RLTGGEPLLR+ L  L   L  L   D    +L+L+TN T L + A +L+ AG++R+ 
Sbjct: 71  RVRLTGGEPLLRRGLATLAAQLSALPGVD----ELSLSTNATQLHKHAASLRAAGVQRIN 126

Query: 63  VSLDALDDANFKRMNDVDVPVSQILHGLDVAHKVGLGPIKINMVVKKGVNDHEILAMAR 121
           VSLD+LD A    +   D  ++ ++ GL+ A   G  PIKINMV+ +GVN+ E+  MA+
Sbjct: 127 VSLDSLDRACSASITGRDS-LASVMSGLEAAKAAGFAPIKINMVLLRGVNEQEVPQMAQ 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 603,458
Number of extensions: 19584
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)