BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0217.0001.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   263   7e-72
gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   144   6e-36

>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  263 bits (672), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 134/150 (89%)

Query: 1   MLASLGVTEVPVQRRLRVAFFSTGDELRSVGEPLDPGCVYDSNRYTLYGMLTRLGCDIID 60
           +LASLG+ E PVQRRLRVAFFSTGDELRSVGEPLD GCVYDSNRYTL+GMLTRLGC+++D
Sbjct: 180 LLASLGLAEAPVQRRLRVAFFSTGDELRSVGEPLDEGCVYDSNRYTLHGMLTRLGCEVLD 239

Query: 61  MGVVRDDPVAMEAAFRSACEHADAVITSGGVSVGAADYTKQTMTKLGDMLFWKIGMRPGR 120
           MGVV DDP A+EAAFRSACE ADAVITSGGVSVGAADYTKQ M  LG+M FWKI MRPGR
Sbjct: 240 MGVVPDDPAALEAAFRSACEEADAVITSGGVSVGAADYTKQIMASLGEMAFWKIAMRPGR 299

Query: 121 PMAFGRIASHDRGAYLFGLPGNPVAVMVSF 150
           P+AFGRI S  R AYLFGLPGNPVAV VSF
Sbjct: 300 PLAFGRIRSRGREAYLFGLPGNPVAVTVSF 329


>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  144 bits (363), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 1   MLASLGVTEVPVQRRLRVAFFSTGDELRSVGEPLDPGCVYDSNRYTLYGMLTRLGCDIID 60
           + AS+G  ++ V RR+RVA F TGDEL   G+PL PG +Y+SNR+ L G+L +LGC + D
Sbjct: 177 LAASIGQAQLQVLRRVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSD 236

Query: 61  MGVVRDDPVAMEAAFRSACEHADAVITSGGVSVGAADYTKQTMTKLGDMLFWKIGMRPGR 120
            G+V D   A     R A    D +ITSGGVSVG  D+ K  +   G +  W+I M+PG+
Sbjct: 237 FGIVPDSLQATRETLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGK 296

Query: 121 PMAFGRIASHD--RGAYLFGLPGNPVAVMVSFY 151
           P+AFG++   +    A+  GLPGNPV+  V+F 
Sbjct: 297 PLAFGQVRRGEGTGEAFFMGLPGNPVSSFVTFL 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 629,887
Number of extensions: 24277
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)