BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0032.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310498|ref|YP_003774590.1| superoxide dismutase [Fe] prote...   107   3e-25
gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie...    86   1e-18

>gi|300310498|ref|YP_003774590.1| superoxide dismutase [Fe]
          protein [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  107 bits (267), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/49 (97%), Positives = 49/49 (100%)

Query: 1  MAHTLPALPYELDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFE 49
          MAHTLPALPY+LDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFE
Sbjct: 1  MAHTLPALPYDLDALAPTISKETLEYHYGKHHQTYVTNLNNLIPGTEFE 49


>gi|300311442|ref|YP_003775534.1| acyl-carrier-protein
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 85.9 bits (211), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 51/69 (73%)

Query: 54  FVAKLQASQPGSVVVERDVAANPIPHLDEQKLGAFFTPADKRSAEQQALVKVSEELIAEV 113
           FV++ QA  PG  VV RD+AAN +PHL E  LGA+FTPAD RSAEQ  ++K S+ L+ E+
Sbjct: 25  FVSQWQAKNPGGKVVHRDLAANALPHLSESMLGAYFTPADARSAEQAEVIKQSDALVDEL 84

Query: 114 NAADIIVIG 122
            AAD IVIG
Sbjct: 85  LAADTIVIG 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 395,295
Number of extensions: 13824
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)