BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0031.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310498|ref|YP_003774590.1| superoxide dismutase [Fe] prote...   190   6e-50
gi|300310492|ref|YP_003774584.1| regulator of disulfide bond for...   154   5e-39

>gi|300310498|ref|YP_003774590.1| superoxide dismutase [Fe] protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  190 bits (483), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 96/103 (93%)

Query: 21  EFENLSLEEIIKKSSGGVFNNAAQIWNHTFYWNGLTPKGAGAPSGALADAINAKWGTFDA 80
           EFENLSLEEIIKKSSGG+FNNAAQ+WNHTFYWNGLTPKG GAPSGALADAINAKWG+FDA
Sbjct: 47  EFENLSLEEIIKKSSGGIFNNAAQVWNHTFYWNGLTPKGQGAPSGALADAINAKWGSFDA 106

Query: 81  FKAEFTKQGLANFGSGWTWLVKKADGTLDIVNTTGXKADGTLD 123
           FKAEFTKQGLANFGSGWTWLVKKADGTLDIVNTTG     T D
Sbjct: 107 FKAEFTKQGLANFGSGWTWLVKKADGTLDIVNTTGAGTPLTTD 149


>gi|300310492|ref|YP_003774584.1| regulator of disulfide bond
           formation redox protein [Herbaspirillum seropedicae
           SmR1]
          Length = 128

 Score =  154 bits (389), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 81/93 (87%)

Query: 126 NTGAAPYELLLAALAACTSLTLRMYADRKGWDLGTIHIDARFSRDDCGLENIERTVTFGN 185
           +TG APYELLLAALA+CTSLTLRMYADRKGWDLG+I +DA F RDD GLE I R ++FGN
Sbjct: 35  DTGPAPYELLLAALASCTSLTLRMYADRKGWDLGSISVDAHFGRDDSGLETITRKISFGN 94

Query: 186 TLTPEQLTRLGEICEKTPVTKTLREGTPIRTAF 218
           TL+ EQLTRL EICEKTPVTKT+R+GT I+T+ 
Sbjct: 95  TLSQEQLTRLAEICEKTPVTKTIRQGTAIQTSM 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 647,002
Number of extensions: 24522
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)