BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0030.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...   273   7e-75
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...    55   4e-09
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...    55   5e-09

>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score =  273 bits (699), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 161/215 (74%)

Query: 1   LNSHHTFSFGHYYDPQQLGFGPLQVINEDRVTSGMGFGTHGHSDMEIISYVLDGALEHKD 60
           L+S+H+FSF  YYDP+ +GFGPL+VINEDRV +G GFGTHGH DMEIISYVL+G L HKD
Sbjct: 18  LDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHRDMEIISYVLEGELAHKD 77

Query: 61  SMGTGSVLHYGDVQRMSAGSGVRHSEFNHSKTEPVHFLQIWIQPNVKGIPPSYEEKNFTP 120
           SMG GSV+  GDVQRMSAG+GVRHSE+NHS+    HFLQIWI P+  G  P Y+E +F+ 
Sbjct: 78  SMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIMPDRAGAEPGYQEAHFSA 137

Query: 121 EQKQGQLRLIASSDGRDNSVLIHQDASIYASILNGDAKLEHALGAKRLGYVHLIRGQLTV 180
             K G+LRL+AS+DGRD SV ++QDA +YA + +G    E+ L   RLGYVH+ RG+++V
Sbjct: 138 ADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTLPQGRLGYVHVARGKISV 197

Query: 181 NGTQLSGGDALKISAESLVTFEKAEAAEFLLFDLP 215
           NG  L  GDA+K+SA   +     + AE LLFDLP
Sbjct: 198 NGQALEAGDAVKLSAVDRIEIGGGDKAEVLLFDLP 232


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 22/189 (11%)

Query: 40  HGHSDMEIISYVLDGALEHKDSMGTGSVLHYGDVQRMSAGSGVRHSEF----NHSKTEPV 95
           H H  +  ++Y+  GA+ H+DS+G    +  G V  M+AG G+ HSE        +  PV
Sbjct: 57  HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116

Query: 96  HFLQIWIQPNVKGIPPSYEE---------KNFTPEQKQGQLRL--IASSDGRDNSVLIHQ 144
           H LQ+W+      +P   E+          +  P+   G  RL  +A S    +S +   
Sbjct: 117 HGLQMWV-----ALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTA 171

Query: 145 DASIYASILNGD-AKLEHALGAKRLGYVHLIRGQLTVNGTQLSGGDALKISAESLVTFEK 203
             ++Y +    D A LE A   +    V+++RG+++++G +L  G    +   + VT + 
Sbjct: 172 SPTLYVAGSTTDGATLEIAAEVQERA-VYVVRGEVSLDGERLEAGTLAILEPGAAVTLQA 230

Query: 204 AEAAEFLLF 212
                F++ 
Sbjct: 231 EGETVFMIL 239


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score = 54.7 bits (130), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 36  GFGTHGHSDMEIISYVLDGALEHKDSMGTGSVLHYGDVQRMSAGSGVRHSEFNHSKTEPV 95
           GF  H H   E ++Y+L G + H+D+ G   +L  G +Q M+AG G+ HSE    +   +
Sbjct: 61  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLM 120

Query: 96  HFLQIWI---------QPNVKGIPPSYEEKNFTPEQKQGQLRLIASSD-GRDNSVLIHQD 145
              Q+W+         +P  + IP +   +  T  Q   ++R++A S  G D ++     
Sbjct: 121 SGFQLWVNLAGKDKMTEPGYQDIPAAGIPE--TSPQPGVRVRVLAGSAFGTDGAIRRATT 178

Query: 146 ASIYASI-LNGDAKLEHALGAKRLGYVHLIRGQLTVNGT--QLSGGDALKISAESL---- 198
             +Y  + L     L   + A    ++++  G L V     +    +A +++  S     
Sbjct: 179 EPLYLDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGS 238

Query: 199 --VTFEKAEAAEFLLF 212
             VT    +A+ FLL 
Sbjct: 239 AGVTVRAEQASRFLLI 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 717,964
Number of extensions: 30650
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)