BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0024.p
         (96 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313800|ref|YP_003777892.1| transmembrane protein [Herbaspi...    96   8e-22

>gi|300313800|ref|YP_003777892.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 95.5 bits (236), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 64/90 (71%)

Query: 4   IDDPLHVGRAFTLGFAIFAEVLCPLLIVPGILTRLASAAVLVLLGVSMFLVHPDWSVAEG 63
           I+DP  +G   +L  AIFAE LCPLLI  G+ TRLA   ++ +L V+M  VHPDWS+AEG
Sbjct: 51  IEDPFGLGPTVSLWAAIFAEALCPLLIAAGLFTRLACLPIIGVLLVAMLAVHPDWSIAEG 110

Query: 64  QFGWLLMIVFGSIALMGAGRYSIDAVLAKK 93
           QFGWLL+++F +IAL G G++ +   +A+ 
Sbjct: 111 QFGWLLLVIFTAIALCGPGQWRVGHGMAQP 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 268,010
Number of extensions: 7457
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 1,619,870
Length adjustment: 65
Effective length of query: 31
Effective length of database: 1,312,095
Effective search space: 40674945
Effective search space used: 40674945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)