BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0023.p
         (594 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase [Herb...  1008   0.0  

>gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/593 (80%), Positives = 531/593 (89%), Gaps = 4/593 (0%)

Query: 4   KFLAVGDAEAAMRHRGSATKVVDLNGRSVVPGLNDSHIHLIRGGLNYNLELRWEGVPSLA 63
           KFL VG A   MR + +AT+V+DL GR+V+PGLNDSH+HLIRGGLNYNLELRWEGVPSLA
Sbjct: 37  KFLEVGSAAEVMRLKQAATQVIDLGGRTVIPGLNDSHLHLIRGGLNYNLELRWEGVPSLA 96

Query: 64  DALRMLREQALRTPHPQWVRVVGGWTEFQFAERRMPTLEEINAAAPDTPVFILHLYDRAL 123
           DALRML++QA RTPHPQWVRVVGGWTEFQFAE+RMPTLEE+NAAAPDTPVF+LHLYDRAL
Sbjct: 97  DALRMLKDQAARTPHPQWVRVVGGWTEFQFAEKRMPTLEELNAAAPDTPVFVLHLYDRAL 156

Query: 124 LNQAALRAVGYNKDTPNPPGGEIQRDAAGNPTGMLIARPNAMILYATLAKGPTLPLDQQV 183
           LN+AAL+AVGY KDTPNPPGGEI RDA+GNPTGMLIARPNAMILYATLAKGPTLP + QV
Sbjct: 157 LNRAALQAVGYTKDTPNPPGGEIVRDASGNPTGMLIARPNAMILYATLAKGPTLPQEYQV 216

Query: 184 NSTRQFMRELNRLGVTSVIDAGGGFQNYPEDYAIIDQLAREQQLTVRIAYNLFTQNKGKE 243
           NSTRQFMRELNRLGVTS IDAGGGFQNYP+DY II++LA + QLT+RIAYNLFTQNKG E
Sbjct: 217 NSTRQFMRELNRLGVTSAIDAGGGFQNYPDDYQIINKLAADGQLTIRIAYNLFTQNKGGE 276

Query: 244 LGDFQRWTDMIKPGQGDDFYRHNGAGEMLVFSAADFEDFLEPRPELAAGMEDELEKVVRH 303
           L DFQ+WT M+KPG GDDF RHNGAGEMLVFSAADFEDFLEPRP+LA GME+ELE+VVRH
Sbjct: 277 LADFQKWTGMVKPGDGDDFLRHNGAGEMLVFSAADFEDFLEPRPDLAEGMEEELERVVRH 336

Query: 304 LVSNRWPFRLHATYDESISRMLDVFEKVNRDIPFNGLHWIFDHAETISPRNIERVRELGG 363
           LVSNRWPFRLHATYDESI+RMLDVFEKVNRDIPF+GLHW+FDHAETI+ RNIERV+ LGG
Sbjct: 337 LVSNRWPFRLHATYDESIARMLDVFEKVNRDIPFDGLHWMFDHAETITERNIERVKALGG 396

Query: 364 GLAIQHRMAFQGEYFVDRYGKEAAKATPPVARMLDMGVPVGAGTDATRVASYNPWTALYW 423
           G+AIQHRMAFQGEYF+DRYG EAA+ TPP+A+ML+MGVPVGAGTDATRVASYNPWTALYW
Sbjct: 397 GIAIQHRMAFQGEYFIDRYGSEAAEHTPPIAKMLEMGVPVGAGTDATRVASYNPWTALYW 456

Query: 424 LVSGKTVGGLQL--AEAGLPRETALELWTAGSAWFSNEQDKKGRIKAGQLADLVVLSSDF 481
           LVSG+TVGG +L  A   LPRETALELWTAGSAWFS+EQ KKGRI+AGQLADL VLS+DF
Sbjct: 457 LVSGRTVGGAKLYGAAGRLPRETALELWTAGSAWFSSEQAKKGRIQAGQLADLAVLSADF 516

Query: 482 FSVAEEDIKAIESVMTVVGGKIVYGAEEFDPLAPPAIPVLPDWSPVKNVPGHYRALKSGA 541
           FSV E++IK IES+MTVV GK+VYGA  F    P  IPVLP+WSPV  VPGHYRA+    
Sbjct: 517 FSVHEDEIKGIESLMTVVDGKVVYGAGPFSSHGPGEIPVLPEWSPVAKVPGHYRAVAK-- 574

Query: 542 QSQQQQRRSILPHQCAGACNVHAHSHDVARRSSVPASNFSGFWGALGCSCFAF 594
               +Q+++ LPH C G+C VH H+HDVAR+SSVP SNF+GFWGALGCSCFAF
Sbjct: 575 TDAARQKKATLPHACVGSCGVHGHAHDVARKSSVPVSNFAGFWGALGCSCFAF 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,018,069
Number of extensions: 91544
Number of successful extensions: 279
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 503
Effective length of database: 1,188,985
Effective search space: 598059455
Effective search space used: 598059455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)