BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0018.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...   327   3e-91
gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...    67   1e-12

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  327 bits (839), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/182 (85%), Positives = 175/182 (96%)

Query: 1   MKVRDFWLLFFSFFVCGMSTNGYIGTQFIAMCNDYGISEVGGASILAAMGMLDLVGTTLS 60
           +++ DFWLLF SFFVCG+STNGYIGTQFIAMCNDYGI+EV  ASILAAMGMLDLVGTTLS
Sbjct: 237 VRMPDFWLLFASFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASILAAMGMLDLVGTTLS 296

Query: 61  GWLSDRFNPRVLLFWYYGLRGVALIFLPFAFGLDYFGLTVFAIFYGLDWIATVPPTVRLA 120
           GWLSDR+NPRVLLFWYYGLRG+ALIFLP+AFGL Y+GLT+FAIFYGLDWIATVPPTVRLA
Sbjct: 297 GWLSDRYNPRVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLA 356

Query: 121 NDVFGRLAAPIVFGWIVAGHQLGAAAATTISGFMRANLGDYTASSMLMGVACLIGAVMVL 180
           NDVFGRLAAPIVFGWIVAGHQLGAA ATT++G++RA+LG+YT SS+LMGVACL+GAV+VL
Sbjct: 357 NDVFGRLAAPIVFGWIVAGHQLGAATATTLAGYLRASLGNYTLSSILMGVACLVGAVLVL 416

Query: 181 RI 182
           RI
Sbjct: 417 RI 418


>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 4   RDFWLLFFSFFVCGMSTNGYIGTQ---FIAMCN-DYGISEVGGASILAAMGMLDLVGTTL 59
           R + LL   FF CG     +I T    ++ +C+   G++    A+ LA +G+ ++ G+  
Sbjct: 216 RGYQLLTLGFFACGFQL-AFIATHLPGYLELCHMPMGLA----ATALALIGLFNMAGSWA 270

Query: 60  SGWLSDRFNPRVLLFWYYGLRGVALIFLPFAFGLDYFGLTVFAIFYGLDWIATVPPTVRL 119
            GWL  R+ P+ +L W Y +R  A I L F        +T+FA   GL W+ TVP T  L
Sbjct: 271 CGWLGGRYRPQRVLGWLYLVRSTA-IGLFFIAPKSSQSVTLFAAVMGLTWLGTVPLTTGL 329

Query: 120 ANDVFGRLAAPIVFGWIVAGHQLGAAAATTISGFMRANLGDYT 162
              +FG      +FG     HQ+G+     + G+M    G Y+
Sbjct: 330 VARLFGTAHMGTLFGVCFLSHQVGSFLGAWLGGWMLEVTGSYS 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.145    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,946
Number of extensions: 27724
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)