BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0216.0010.p
         (122 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H...   137   2e-34
gi|300313332|ref|YP_003777424.1| stringent starvation transcript...    55   1e-09

>gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase
          [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  137 bits (345), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 77/93 (82%)

Query: 5  LYSYFRSSASYRVRIALHLKGLSYDTVPVHLLNNGGEQYAPAFSALNPQSLVPVMEEEGR 64
          LYSYFRSSASYRVRIALHLK L Y+TVPVHLLN GGEQ  PAF+ +NP +LVPV+ EEG 
Sbjct: 4  LYSYFRSSASYRVRIALHLKDLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAEEGH 63

Query: 65 HITQSLAILEYLEERFPTPALLPPGLLDRAHVR 97
          +++QSLA+LE LEER PTP+LLP     RAH+R
Sbjct: 64 YVSQSLAMLELLEERHPTPSLLPGDAFQRAHIR 96


>gi|300313332|ref|YP_003777424.1| stringent starvation transcription
           regulator A protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 55.5 bits (132), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 5/99 (5%)

Query: 5   LYSYFRSSASYRVRIALHLKGLSYDTVPVHLLNNGGEQYAPAFSALNPQSLVPVMEEEGR 64
           LYS      S R R+ L  KG+ ++   V L N   +      S +NP   VP++ E   
Sbjct: 4   LYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPED-----ISVMNPYGQVPILVERDL 58

Query: 65  HITQSLAILEYLEERFPTPALLPPGLLDRAHVRLNLPKF 103
            + +S  I EY++ERFP P L+P   L RA  RL L  F
Sbjct: 59  VLYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNF 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 432,441
Number of extensions: 17897
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 48
Effective length of database: 1,269,480
Effective search space: 60935040
Effective search space used: 60935040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)