BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0058.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310338|ref|YP_003774430.1| glyoxalase II protein [Herbaspi...   100   2e-22

>gi|300310338|ref|YP_003774430.1| glyoxalase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 9/194 (4%)

Query: 13  MDVLGIDEITYGADDLPTCRQFFLDWGMTLAQESADALVFESQNGCRVVVRSSADPALPP 72
           M+++G D + +G DDLP CRQ+ LD+G+    + A    FE+ +G  VV+R+  D +LPP
Sbjct: 1   MNIIGPDALVFGVDDLPACRQYLLDYGL----KDAGGDRFEALDGTAVVLRAKDDASLPP 56

Query: 73  AIEAGPTLREVVWGVSSAEVLPKFAERI-KDLPGYLNDGKRVGCTDPNGLAVRFQVSQKR 131
           A+     LRE V+GV+ +  L      + +D      DG  V   D  G A+ FQ++ +R
Sbjct: 57  AMGTASLLRETVYGVADSATLDAIETELRRDREVSRRDGV-VRSVDDMGFALAFQLTVRR 115

Query: 132 EVKVECATMNTWNEKNRINQR--SPVYDHASPIEVGHVVFFVKDVRACEKFYCENFGFVP 189
            + +    +N      R       P    A P  + HVV+FV D    E FY    GFV 
Sbjct: 116 PLTLPAERVNGPGHAQRAPNELGLPPELPALPRTLSHVVYFVPDAAKAEAFY-HRLGFVC 174

Query: 190 SDRYPERGAFLRCA 203
           +DR+   G FLR A
Sbjct: 175 TDRFTGVGPFLRPA 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 971,423
Number of extensions: 39874
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)