BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0055.p
         (272 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding prote...   212   3e-56
gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-me...    92   6e-20

>gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  212 bits (539), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/264 (41%), Positives = 152/264 (57%), Gaps = 3/264 (1%)

Query: 5   LAEVFPAERVQFAKRAEAITQDTQGVTLNFTDGSTDKVDLLIGGDGIHSAVRSAMFGKES 64
           L +  P+ER+ F K    +      V L+F DG+T++ D++IG DG++S +R  + G E 
Sbjct: 115 LIKALPSERLSFGKCLTKVEDRGDVVILSFADGTTEEADIVIGADGVNSRIREELLGVEP 174

Query: 65  PRFTGVVAFRAVIPADSV-AQVPNLQAFTKWWGPNPESQIVTFPLNCGKDIFIFATTAQE 123
           P++ G +A RAV P   + A +    A  KWW  +    +V F  +   +++       E
Sbjct: 175 PKYAGYLAHRAVFPTPELKAGMLPFDACVKWWSDD-RHMMVYFVTSKANELYYVTGVPVE 233

Query: 124 TWHLESWTTPGSVQELRDSYAGFHPDATALLDACDEVLKTALYERDPLPQWSKGRLTLLG 183
            W L     P S +E+R+++ G+HP   AL+DA  EV K +L ERDPLP WS+GRL LLG
Sbjct: 234 KWDLNDRWLPSSKEEMRETFHGWHPTVQALVDATVEVTKWSLLERDPLPLWSRGRLVLLG 293

Query: 184 DASHPMMPFMAQGAGMAIEDAVVLARCLEKVATVDGIADALHTYEELRLERTSKIQIGSR 243
           DA HPM P MAQGA MAIED  +LARC ++V  V   ADA   YE  R  R SK+Q  S 
Sbjct: 294 DACHPMKPHMAQGAAMAIEDGAMLARCFKEVG-VSNYADAFALYEANRAARASKVQRISH 352

Query: 244 GNNWLREGGNADWVYGYDAWSVPL 267
            N WLR   +  W +GYD ++ PL
Sbjct: 353 DNTWLRTNEDPSWCFGYDVFTEPL 376


>gi|300310340|ref|YP_003774432.1| FAD-dependent
           2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum
           seropedicae SmR1]
          Length = 376

 Score = 91.7 bits (226), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 31/246 (12%)

Query: 22  AITQDTQGVTLNFTDGSTDKVDLLIGGDGIHSAVRSAMFGK-ESPRFTGVVAFRAVIPAD 80
           A+ +    V ++FTDG T + DL+IG DG++S +R  +F     PR++G   +RAV+P  
Sbjct: 133 AVREVGHKVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYSGQAVWRAVLPRP 192

Query: 81  SVAQVPNLQAFTKWWGP------NPESQIVTFPLNCGKDIFIFATTAQE-TWHLESWTTP 133
                  +   T W GP      NP S+          ++++F T  +    H++  T  
Sbjct: 193 Q-----EIVTCTMWMGPRIKPGVNPVSK---------DEMYLFVTEPRPVNEHVDPTTFV 238

Query: 134 GSVQELRDSYAGFHPDATALLDACDEVLKTAL--YERDPLPQ-WSKGRLTLLGDASHPMM 190
             ++ L + ++   P    + +  D+  +      E   LP+ W +GR+ L+GDA H   
Sbjct: 239 SHLRGLLEEFSA--PVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATT 296

Query: 191 PFMAQGAGMAIEDAVVLARCLEKVATVDGIADALHTYEELRLERTSK-IQIGSRGNNWLR 249
           P +A GA + IEDA+VLA  LE+  TV     AL  +EE R ER    ++  +R      
Sbjct: 297 PHLASGACIGIEDALVLADELERHGTV---PQALAAFEERRWERCRMVVENSARLGEIEV 353

Query: 250 EGGNAD 255
           EGG+ D
Sbjct: 354 EGGDKD 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 940,460
Number of extensions: 39931
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 272
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,222,130
Effective search space: 229760440
Effective search space used: 229760440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)