BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0052.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...    78   3e-16
gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase [H...    63   9e-12

>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase
          oxygenase subunit oxidoreductase [Herbaspirillum
          seropedicae SmR1]
          Length = 349

 Score = 77.8 bits (190), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%)

Query: 18 KDLWYPICPSEFVAERPVSLRRLGKKFVLWREANGALHALEDHCPHRGAPLSMGIAMGDR 77
          K+ WY  C  + +  +P+  +  G+K V +R A G + A+ED CPHRGAPLS+G     +
Sbjct: 4  KNAWYVACTPDEIDSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLSLGFVREGQ 63

Query: 78 IACGYHGVQVRFDGVVMSVPGR 99
          + CGYHG+++  DG  +S+PG+
Sbjct: 64 LVCGYHGLEMGCDGKAISMPGQ 85


>gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 63.2 bits (152), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%)

Query: 17  LKDLWYPICPSEFVAERPVSLRRLGKKFVLWREANGALHALEDHCPHRGAPLSMGIAMGD 76
           L+  WY + P   + + P     LG+K V+W + +GA  AL+D C HR A LS G     
Sbjct: 9   LRRFWYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARLSKGFVENG 68

Query: 77  RIACGYHGVQVRFDGVVMSVPGRGXGA 103
            I CGYHG     +G  + VP    G+
Sbjct: 69  NIVCGYHGWTFNGEGACVRVPQNADGS 95


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 503,171
Number of extensions: 20921
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)