BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0047.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 103 2e-23 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 93 3e-20 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 85 6e-18 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 81 9e-17 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 72 7e-14 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 121/226 (53%) Query: 4 LKLGTRLGLAFGLVVLLLIGITGLGIQSLGALHDGTQLIVKNRYPQVVVANDIVLQISDN 63 L + TRL +AF +++L++ GI LG+ L ++ L+V +RY ++ + N I ++ D Sbjct: 6 LSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISGKVDDV 65 Query: 64 AIAMRNILLIDDHEALLKEIQRIEDGEKGINASLATLQQMLSSDMGRKSYGEISALRATY 123 AI++RN LL+ D + E + IE L +++++ + +++ R +Y Sbjct: 66 AISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTETRKSY 125 Query: 124 EKGQREFLKLAATGATMDASQLLLTSLRNDQQNYINRVKGFIKGGSIVMAKSSAEASDLY 183 +++ KL ++G A +L+L+ + Q+ Y +++ +M +S +A Y Sbjct: 126 AALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQAEAAY 185 Query: 184 HGKTVIMLVMATAAVLLACGFAFWITRSITRPVNHAVQVARSVAAG 229 +IM++ A A A+ I+RSITRP++ AV+VA +VAAG Sbjct: 186 ETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAG 231 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%) Query: 1 MKKLKLGTRLGLAFGLVVLLLIGITGLGIQSLGALHDGTQLIVKNRYPQVVVANDIVLQI 60 + + + RL L FGL+++L++ + GI LG L+ + ++ ++YP+ VVA DIV Q+ Sbjct: 3 LSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVDQL 62 Query: 61 SDNAIAMRNILLIDDHEALLKEIQRIEDGEKGINASLATLQQMLSSDMGRKSYGEISALR 120 + A ++RNILL+ + E +RI ++ I LA L ++L+ R + + + Sbjct: 63 NLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVTAQ 122 Query: 121 ATYEKGQREFLKLAATGATMDASQLLLTSLRNDQQNYINRVKGFIKGGSIVMAKSSAEAS 180 Y + + + L + G A +L+ +R Q +N I+ +M + E Sbjct: 123 NAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDEVE 182 Query: 181 DLYHGKTVIMLVMATAAVLLACGFAFWITRSITRPVNHAVQVARSVAAG 229 Y ++L++A A + A A+ ITRSIT P++ AV+VA +VAAG Sbjct: 183 SNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAG 231 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 109/218 (50%) Query: 1 MKKLKLGTRLGLAFGLVVLLLIGITGLGIQSLGALHDGTQLIVKNRYPQVVVANDIVLQI 60 + +K+ RLG F +++++ I G+G+++L + D T IV +RY +V + I ++ Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 61 SDNAIAMRNILLIDDHEALLKEIQRIEDGEKGINASLATLQQMLSSDMGRKSYGEISALR 120 + A ++RN ++ + E K + R++ ++ LA +++ ++ G + + R Sbjct: 64 NTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQAR 123 Query: 121 ATYEKGQREFLKLAATGATMDASQLLLTSLRNDQQNYINRVKGFIKGGSIVMAKSSAEAS 180 A Y K + + + L +A+ L Q Y VK + S +M KS+ AS Sbjct: 124 ADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERAS 183 Query: 181 DLYHGKTVIMLVMATAAVLLACGFAFWITRSITRPVNH 218 IMLV++ AVLL+ A ITRSITRP+N Sbjct: 184 AASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNE 221 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 81.3 bits (199), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 2/219 (0%) Query: 1 MKKLKLGTRLGLAFGLVVLLLIGITGLGIQSLGALHDGTQLIVKNRYPQVVVANDIVLQI 60 +K +K+ RL + F +++ ++ ITG+G++SL ++ + LIV++RY ++ +A +I + Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 61 SDNAIAMRNILLIDDHEALLKEIQRIEDGEKGINASLATLQQMLSSDMGRKSYGEISALR 120 + A +RN LL + E + + R +L ++++LS+ GR+ + I R Sbjct: 63 NGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEAR 122 Query: 121 ATYEKGQREFLKLAATGATMDASQLLLTSLRNDQQNYINRVKGFIKGGSIVMAKSSAEAS 180 + Y + + +L +A +LL T + Q Y + F+ +M +S E Sbjct: 123 SAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEGR 182 Query: 181 DLYHGKTVIMLVMATAAVLLACGFAFW-ITRSITRPVNH 218 D +ML ++ A+ L C A W +TRSITRP+N Sbjct: 183 DTTQSAIAMMLGLSAVAIAL-CVIAAWLVTRSITRPLNE 220 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 14/236 (5%) Query: 1 MKKLKLGTRLGLAFGLVVLLLIGITGLGIQSLGALHDGTQLIVKNRYPQVVVANDIVLQI 60 MK LK+G RL + F +++L+ + LG+ LG++ D T + + + A I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 SDNAIAMRNILLIDD---HEALLKEIQ----RIEDGEKGINASLATLQQMLSSDMGRKSY 113 +N + ++ DD K+I RI +K + A++ ++ ++ + Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEE-------KRLF 113 Query: 114 GEISALRATYEKGQREFLKLAATGATMDASQLLLTSLRNDQQNYINRVKGFIKGGSIVMA 173 E+ LRA Y ++ + G A ++ T+L +Y + V + V+ Sbjct: 114 DEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVID 173 Query: 174 KSSAEASDLYHGKTVIMLVMATAAVLLACGFAFWITRSITRPVNHAVQVARSVAAG 229 +++A + Y ++L + ++L A+ +TRSITRP+N AV +A +VAAG Sbjct: 174 QTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAG 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,682 Number of extensions: 17791 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 19 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)