BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0036.p (199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314016|ref|YP_003778108.1| two component transcription reg... 275 3e-75 gi|300312179|ref|YP_003776271.1| nif-specific regulatory protein... 130 5e-32 gi|300313916|ref|YP_003778008.1| two component response regulato... 122 2e-29 gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport resp... 121 5e-29 gi|300312042|ref|YP_003776134.1| response regulatory protein [He... 115 3e-27 >gi|300314016|ref|YP_003778108.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 275 bits (702), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 133/167 (79%), Positives = 151/167 (90%) Query: 1 LPLQVKLLRVLQERTVRPVGSNDSTTVDVRILSATHRNLDAAMADGSFREDLYYRLNVVT 60 LPLQVKLLRVLQE+TVR VG+N + VDVRI+SATHR+L+AAM +G FREDLYYRLNVVT Sbjct: 250 LPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVT 309 Query: 61 LALPLLVERREDIALLANHFLQAIAARYQKKLNGFAPDALEILMMASWPGNVRQLYNVVE 120 L LP L ERREDIALLANHFL+ IAA+Y K+L GFAPDALEIL +A WPGNVRQLYNVVE Sbjct: 310 LHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVE 369 Query: 121 QVCALSTAPLIPAALVQRALRVPALEVLRYADAKQRFERDYLIQLLR 167 QVCALSTAPLIPA+LVQRALR P L++LRYA+AKQ+FERDYLI+LL+ Sbjct: 370 QVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLK 416 >gi|300312179|ref|YP_003776271.1| nif-specific regulatory protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 130 bits (328), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 62/129 (48%), Positives = 85/129 (65%) Query: 3 LQVKLLRVLQERTVRPVGSNDSTTVDVRILSATHRNLDAAMADGSFREDLYYRLNVVTLA 62 Q KLLRVLQER VG + S VDVR+++AT+R+L+ A+A G FR DLYYR+NVV++ Sbjct: 311 FQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIF 370 Query: 63 LPLLVERREDIALLANHFLQAIAARYQKKLNGFAPDALEILMMASWPGNVRQLYNVVEQV 122 +P L ERREDI L HFL+ Q+ + +P A++++M WPGNVR+L N VE+ Sbjct: 371 IPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMNCYWPGNVRELENCVERT 430 Query: 123 CALSTAPLI 131 + LI Sbjct: 431 ATMMRGDLI 439 >gi|300313916|ref|YP_003778008.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 3/133 (2%) Query: 1 LPLQVKLLRVLQERTVRPVGSNDSTTVDVRILSATHRNLDAAMADGSFREDLYYRLNVVT 60 L Q K+LRVLQER + PVG N S VDVR+++ATHR+L + G FREDL+YRL V+T Sbjct: 242 LATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRLQVLT 301 Query: 61 LALPLLVERREDIALLANHFLQAIAARYQKKLNGFAPDALEILMMASWPGNVRQLYNVVE 120 + +P L ER DI +A HFL+ + K+++ P A +L+ +WPGNVR+L N +E Sbjct: 302 IMVPALRERPGDILTIAEHFLRQLGGDAPKRIS---PAAARLLLQHAWPGNVRELRNTME 358 Query: 121 QVCALSTAPLIPA 133 + +S I A Sbjct: 359 RAAVMSHGLCIEA 371 >gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 88/139 (63%), Gaps = 7/139 (5%) Query: 1 LPLQVKLLRVLQERTVRPVGSNDSTTVDVRILSATHRNLDAAMADGSFREDLYYRLNVVT 60 L LQVKLLRVLQER + +G N+S +D R+++A+ +L A+G FREDLYYR+ VV Sbjct: 253 LALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIGVVA 312 Query: 61 LALPLLVERREDIALLANHFLQAIAARYQKKLNGFAPDALEILMMASWPGNVRQLYNV-- 118 + LP L +RREDIALL HF QA A RY+++ ++ ++ WPGNVR+L N Sbjct: 313 IDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRNFAD 372 Query: 119 -----VEQVCALSTAPLIP 132 VEQ+ A + + +P Sbjct: 373 RWVLGVEQMAASAVSSAVP 391 >gi|300312042|ref|YP_003776134.1| response regulatory protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 89/166 (53%) Query: 1 LPLQVKLLRVLQERTVRPVGSNDSTTVDVRILSATHRNLDAAMADGSFREDLYYRLNVVT 60 +PLQ KLLR LQER + VG + VDVR++ ATH+NL A G FREDLYYRL + Sbjct: 254 MPLQAKLLRFLQERVIERVGGHTEIPVDVRVICATHQNLKELTASGGFREDLYYRLCEII 313 Query: 61 LALPLLVERREDIALLANHFLQAIAARYQKKLNGFAPDALEILMMASWPGNVRQLYNVVE 120 + +P L ER D LLA HF+Q A+ + + DA+ + WPGNVR++ N V Sbjct: 314 IKIPALKERHGDAVLLARHFVQKFCAKEGRATLHLSQDAVAAIERYEWPGNVREMENCVM 373 Query: 121 QVCALSTAPLIPAALVQRALRVPALEVLRYADAKQRFERDYLIQLL 166 + ++ I A + ++ E L + ER +++ L Sbjct: 374 RAVIMADGQQITAEDLGLSVEGREAEPLNLRQVRDEAERKAVVKAL 419 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 558,472 Number of extensions: 21052 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 12 Length of query: 199 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,236,335 Effective search space: 145887530 Effective search space used: 145887530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)