BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0035.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314015|ref|YP_003778107.1| hyperosmotically inducible peri...   118   9e-29
gi|300310531|ref|YP_003774623.1| periplasmic or secreted lipopro...    60   3e-11

>gi|300314015|ref|YP_003778107.1| hyperosmotically inducible
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  118 bits (296), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 84/116 (72%), Gaps = 5/116 (4%)

Query: 1   MQKTKAISTLVAAAFLTAATAAPAVYAADTSTGSSSASTTQKAGAYVDDSVITAKVKAAF 60
           M+KT   + L+AA+ L  A A         +   ++  T QKAGAY+DDSVITAKVKAA 
Sbjct: 1   MKKTTFTARLLAASLLVTAAAPAV-----QAADRAAPVTAQKAGAYIDDSVITAKVKAAL 55

Query: 61  VEDSQVSALKIKVTTKKGIVTLAGAVPNADAGQHVLQLAAAIDGVKDVKSELTIKS 116
           VED QVSA+KI VTTK G+VTL G+VP+A+ GQH LQL A I+GV+DVKS+LT+K+
Sbjct: 56  VEDKQVSAMKINVTTKDGVVTLKGSVPSAELGQHALQLVAGIEGVRDVKSDLTVKA 111


>gi|300310531|ref|YP_003774623.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query: 33  GSSSASTTQKAGAYVDDSVITAKVKAAFVEDSQVSALKIKVTTKKGIVTLAGAVPNADAG 92
           G +S    +  G YVDD+VIT KVKAA   +  + + +I V T KG+V L+G V ++ A 
Sbjct: 26  GCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLKSTEINVETYKGVVQLSGFVSSSTAA 85

Query: 93  QHVLQLAAAIDGVKDVKSELTIK 115
               +LA  + GV  V+++L +K
Sbjct: 86  ARATELARGVKGVVSVRNDLRLK 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.118    0.292 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 159,504
Number of extensions: 3354
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 124 (52.4 bits)