BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0034.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314007|ref|YP_003778099.1| urease accessory UreJ transmemb...   213   8e-57
gi|300313174|ref|YP_003777266.1| signal peptide protein [Herbasp...    64   1e-11

>gi|300314007|ref|YP_003778099.1| urease accessory UreJ
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  213 bits (543), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 121/132 (91%)

Query: 25  HPGHPDSLMSASMSFGAGFSHPFSGVDHLLAMLAVGLWAAQNKRSAMWVLPLAFPLMMVV 84
           HPGHP S M AS S  AGF+HPFSG+DHLLAMLAVGLWAAQNK+ A+WVLPLAFPLMMV 
Sbjct: 28  HPGHPGSAMDASASMAAGFAHPFSGIDHLLAMLAVGLWAAQNKQRALWVLPLAFPLMMVA 87

Query: 85  GALLAFAGLSIPAAETGIAASVAVLGLLIAFAVRMPLWASTVVVSLFAVFHGYAHGSELP 144
           GALLAFAGL +PA ETGIAASVAVLGLLIAFAVRMPLW ST+VVSLFA+FHGYAHG+ELP
Sbjct: 88  GALLAFAGLQVPAVETGIAASVAVLGLLIAFAVRMPLWGSTLVVSLFAMFHGYAHGAELP 147

Query: 145 HGSSAALYGAGW 156
           HGSSAA+YGAG+
Sbjct: 148 HGSSAAMYGAGF 159


>gi|300313174|ref|YP_003777266.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 161 RLGAQWDW-KNTAWWQSNGTHIGGYWDLTVAEWHEKRYNNTDSSKN 205
           RLGAQ++W  N  +WQSNGTHIGGYWDL++A W    YNNT+ S N
Sbjct: 45  RLGAQFNWGPNWNFWQSNGTHIGGYWDLSLANWRMNHYNNTNDSGN 90


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,374
Number of extensions: 30475
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)