BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0028.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase f...   299   1e-82

>gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  299 bits (765), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 142/152 (93%), Positives = 146/152 (96%)

Query: 70  GRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSM 129
           GRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSM
Sbjct: 240 GRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDVRRAELTMRVDGTEGFTLKGSSSMSM 299

Query: 130 ISRDPLNLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADVVTIATPKLG 189
           ISRDPL LVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVAD+VTI+TPKLG
Sbjct: 300 ISRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQDRFGPGQGFTHQVADIVTISTPKLG 359

Query: 190 ALVNKVNFTDKVTPWTFGLTALLKNLAQRKLI 221
           ALVN VNF+D+  PWTFGLTAL KNLA RKLI
Sbjct: 360 ALVNTVNFSDQTAPWTFGLTALFKNLADRKLI 391



 Score =  110 bits (275), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 1  MTHAFTTQAHLPEDHQQATLVGRIWQPGIGPVLVKVQADGVYDLTTVAATSSQLLELDNP 60
          M H F+ QAHLPEDH QATL+GRIWQPG+GPVLV++ ADG YDLT +AATSS+LLELDNP
Sbjct: 1  MAHTFSLQAHLPEDHAQATLIGRIWQPGVGPVLVRIDADGAYDLTLIAATSSELLELDNP 60

Query: 61 AGA 63
          A A
Sbjct: 61 AAA 63


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,396
Number of extensions: 29242
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)