BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0027.p (508 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313170|ref|YP_003777262.1| altronate hydrolase [Herbaspiri... 438 e-124 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 366 e-102 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 198 9e-52 gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 187 2e-48 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 168 9e-43 >gi|300313170|ref|YP_003777262.1| altronate hydrolase [Herbaspirillum seropedicae SmR1] Length = 511 Score = 438 bits (1127), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/241 (87%), Positives = 223/241 (92%) Query: 211 ARAIADYFRRDIHPEALADFPNIDGIVALTHGLGCAVDSEGEPLAMLRRTLAGYAKHPNF 270 ARAIADYFRRDIHPE LAD+PNIDG+VALTHG GCA+DS+GEPL +LRRTLAGYA HPNF Sbjct: 139 ARAIADYFRRDIHPEVLADYPNIDGVVALTHGQGCALDSQGEPLQILRRTLAGYATHPNF 198 Query: 271 AAVLIVGLGCETNQISGLLEAHNLKENEYFHTFTIQSTGGTAKTVALGIEKIKKMLPAAN 330 AAVL+VGLGCETNQISGL+E+HNLKE EYFHTFTIQ TGGTAKTVALGIEKIKKMLP AN Sbjct: 199 AAVLVVGLGCETNQISGLMESHNLKEGEYFHTFTIQGTGGTAKTVALGIEKIKKMLPKAN 258 Query: 331 NVKREPVPASHLTLGLQCGGSDGYSGITANPALGAAVDLLVRHGGTAILSETPEIYGAEH 390 ++KREPV A HLTLGLQCGGSDGYSGITANPALGAAVDLLVRHGGTAILSETPEIYGAEH Sbjct: 259 DIKREPVSAKHLTLGLQCGGSDGYSGITANPALGAAVDLLVRHGGTAILSETPEIYGAEH 318 Query: 391 LLTRRAVSSEVGEKLLARIAWWEEYCARNGAEMNNNPSAGNKAGGLTTILXLRAVAIVET 450 LLTRRAVS EVGEKLLARIAWWEEYCA+N AEMNNNPSAGNKAGGLTTIL A+ + Sbjct: 319 LLTRRAVSPEVGEKLLARIAWWEEYCAKNDAEMNNNPSAGNKAGGLTTILEKSLGAVAKG 378 Query: 451 G 451 G Sbjct: 379 G 379 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 172/209 (82%), Positives = 190/209 (90%) Query: 1 MTNAKLEPQGSDVETARALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERA 60 MTNAKLEPQGSDVETAR LAKDLGVELEIVQVTGPNR+PFLMTGKADMVI++FSITPER Sbjct: 52 MTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQ 111 Query: 61 KVISFTHPYGASQFVVAAPKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRF 120 KV++FT PYGASQFVVAAPKG IKSL DL GKR+AVVRGNMQDSLLTP+APKG IVRF Sbjct: 112 KVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRF 171 Query: 121 DDDATVTAAVVSGQVDGLCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQ 180 DDDATVTAA++SGQVD LCTPN+LA+AIA+QNPSK LETKFAIKDIPYAIG+R+ EP L+ Sbjct: 172 DDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALE 231 Query: 181 KWLNAWVDANTKNGRLGQIYQQWVGAPGP 209 KWLN W+ AN KNG+L IYQQWVG+P P Sbjct: 232 KWLNEWISANLKNGKLPGIYQQWVGSPMP 260 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 198 bits (503), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 102/209 (48%), Positives = 133/209 (63%) Query: 1 MTNAKLEPQGSDVETARALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERA 60 M + KL GSDVETA+ +AKD G+ELE+V T NRVP+L T KAD+VI+ FSITPERA Sbjct: 53 MKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTLTNRVPYLQTNKADIVISAFSITPERA 112 Query: 61 KVISFTHPYGASQFVVAAPKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRF 120 KVI F+ PY VV AP+ I S ADL GK+I RG D LT +AP ATI RF Sbjct: 113 KVIDFSVPYAPILVVVGAPRSMKITSPADLAGKKIIATRGTTNDQELTKIAPSSATITRF 172 Query: 121 DDDATVTAAVVSGQVDGLCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQ 180 DDDAT A+VSGQ D T L + ++NPS+ +E+K +K A+G+R+ EP L+ Sbjct: 173 DDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSRDIESKLTLKANLLAVGLRKGEPRLK 232 Query: 181 KWLNAWVDANTKNGRLGQIYQQWVGAPGP 209 + ++ W+ N NG L IY+++ A P Sbjct: 233 EKIDGWIRTNLSNGELNTIYKKYHEAELP 261 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 187 bits (474), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 132/210 (62%), Gaps = 1/210 (0%) Query: 2 TNAKLEPQGSDVETARALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERAK 61 ++ KL+ GSDVE AR LA+DLGV+L+++ V RVP L +AD+V+ + SITPER K Sbjct: 54 SDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLK 113 Query: 62 VISFTHPYGASQFVVAAPKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFD 121 VI F+ PY ++ APK IK ADLNGKRI V R D+L T A KGA I+R++ Sbjct: 114 VIDFSTPYAVISLIIGAPKSMVIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYE 172 Query: 122 DDATVTAAVVSGQVDGLCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQK 181 DDAT+ ++V+GQVD + + + ++ P K LE KF K I I +N+P L++ Sbjct: 173 DDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKE 232 Query: 182 WLNAWVDANTKNGRLGQIYQQWVGAPGPRA 211 W++ WV N KNG+L IY+++ G P A Sbjct: 233 WIDGWVKTNMKNGKLNAIYKKYHGRDLPAA 262 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 168 bits (426), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 131/208 (62%) Query: 2 TNAKLEPQGSDVETARALAKDLGVELEIVQVTGPNRVPFLMTGKADMVIATFSITPERAK 61 +A L+PQG D++ A +AK LGV++E++ V+ NR+P+L T K D+VI++ ER K Sbjct: 50 VDADLKPQGLDIDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREK 109 Query: 62 VISFTHPYGASQFVVAAPKGTAIKSLADLNGKRIAVVRGNMQDSLLTPLAPKGATIVRFD 121 VI F+ Y V P ++KS ADL GK IAV RG+++D LT + P AT+ R++ Sbjct: 110 VIDFSAAYAPFFNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYE 169 Query: 122 DDATVTAAVVSGQVDGLCTPNALAAAIARQNPSKGLETKFAIKDIPYAIGIRQNEPELQK 181 D+ + ++ +SGQV + T N +AAAI +NP K ETKF IKD P IG+ + E +LQ Sbjct: 170 DNNSTISSFLSGQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQD 229 Query: 182 WLNAWVDANTKNGRLGQIYQQWVGAPGP 209 ++A + + K+G L I Q+W+G P P Sbjct: 230 KVDAILAESKKDGSLSAISQKWLGMPLP 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,699,778 Number of extensions: 74879 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 16 Length of query: 508 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 419 Effective length of database: 1,198,455 Effective search space: 502152645 Effective search space used: 502152645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)