BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0025.p (191 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 293 6e-81 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 201 2e-53 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 192 2e-50 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 176 1e-45 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 175 2e-45 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 293 bits (750), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 140/158 (88%), Positives = 150/158 (94%) Query: 1 MSAIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGD 60 MSAIV I +LHKSFG+NKVLNGVSLDVQKGQMVAIIG+SGSGKSTLLRCLNGLE++D+GD Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 INVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKI 120 I VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPH+TVERNITLALTTIKKM+T +AK I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 121 AHNVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMA 158 AH VL LVGLE KK+AYPEQLSGGQAQRVAIARSLAMA Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMA 158 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 201 bits (512), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/155 (65%), Positives = 122/155 (78%), Gaps = 1/155 (0%) Query: 3 AIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDIN 62 IV INN+ K FG+N+VLNG+SL V++GQ+VAIIGRSGSGKST+LRC+NGLE ID G I Sbjct: 2 PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIAH 122 V GH + H + +L ELRK VG+VFQ YNLFPH+TVE NI L+ +KK AT A++ A Sbjct: 62 VAGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 123 NVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAM 157 VL VGL+ K++AYPEQLSGGQ QRVAIARSLAM Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAM 155 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/157 (60%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 1 MSAIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGD 60 M +V + +HK FG+N VL GVS V +G++VAIIG+SGSGKST LRC+N LE+ID+G Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 INVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKI 120 I+VCGH +H L+LR LR+ VGIVFQ YNLFPH+TV +NITL T +K+M +A+ + Sbjct: 61 ISVCGHALHAAG-LDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTL 119 Query: 121 AHNVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAM 157 A VL VGL K AYPEQLSGGQ QRVAIARSLA+ Sbjct: 120 AQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLAL 156 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 176 bits (446), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/157 (58%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 2 SAIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDI 61 IV ++ ++KSFG N+VL GVS +V +G+M+AIIG SGSGKST LRC++ LE IDSG I Sbjct: 24 PVIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSI 83 Query: 62 NVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIA 121 V G + P +++L +LR++VGIVFQSYNLFPH+ V N+ LAL +K+ AEA+++A Sbjct: 84 EVAGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVA 142 Query: 122 HNVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMA 158 L VGL+ K AYPEQLSGGQ QRVAIARSLAMA Sbjct: 143 LAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMA 179 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 119/156 (76%), Gaps = 1/156 (0%) Query: 3 AIVSINNLHKSFGTNKVLNGVSLDVQKGQMVAIIGRSGSGKSTLLRCLNGLERIDSGDIN 62 +++I+N+ K FG N+VL G+SLDV+ G+++AIIG+SGSGKSTLLRC+NGLE ID G+I+ Sbjct: 2 PLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNIS 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHVTVERNITLALTTIKKMATAEAKKIAH 122 V G + +L LR LR +VG++FQ +NLFPH++V RN+ +A +K ++ AEA K A Sbjct: 62 VAGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 123 NVLTLVGLEAKKEAYPEQLSGGQAQRVAIARSLAMA 158 L VGL K +AYP+QLSGGQ QRVAIAR+L+M+ Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMS 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 560,945 Number of extensions: 21053 Number of successful extensions: 383 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 121 Length of query: 191 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,241,070 Effective search space: 137758770 Effective search space used: 137758770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)