BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0022.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871...   433   e-122

>gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/303 (67%), Positives = 241/303 (79%)

Query: 1   VRLIQFEDRQGSRKVGIVCGKAINVVSQVGTMHELALLAIAEGNSLERQAQLLNSNTQED 60
           VRLIQ+ DR G R+VGIV G  I  + QV TM ELALLA+  G  LERQAQLLN++  ED
Sbjct: 9   VRLIQYRDRAGERRVGIVNGGQIQALDQVATMRELALLALQRGIGLERQAQLLNTDRCED 68

Query: 61  YAAILKENRILAPLDHADPAHCLVSGTGLTHLGSASTRDKMHQKLDDDESAMTDTMRMFK 120
           YAAIL E RILAPLDH DPAHC +SG G THLGSA+TRDKMH++++ DE   TDT  M +
Sbjct: 69  YAAILAEGRILAPLDHPDPAHCRISGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 128

Query: 121 WGLEGGRPGRGKIGAQPEWFYKGDGAIVVNPGAPFPMPEFAEDAGEEPELTGLYIIGDDG 180
           WG+ GGRP  G+ G QPEWFYKGDG+ +V PGA  P P+FA D GEEPE+ GLY+I ++G
Sbjct: 129 WGIAGGRPAAGEAGVQPEWFYKGDGSSIVAPGAALPRPDFALDGGEEPEIVGLYLIDEEG 188

Query: 181 QPHRLGFAIGNEFSDHVVERKNYLYLAHSKLRYCSFGPELLVGELPANLVGMSRIRRDGR 240
            P RLGFAIGNEFSDHV+ER+NYLY  HSKLR+CSFGPELLVG  PA+LVGM+RIRR+GR
Sbjct: 189 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCSFGPELLVGLPPAHLVGMTRIRRNGR 248

Query: 241 VIWEKEFLSGQDNMCHAIENLEYHHFKYNQFLRPGDIHVHFFGTATLSFADGVRTQLGDT 300
           VIWE+EFL+G DNMCH+IENLEYH+FKY+  L  GD+HVH+ G A LSFA  VRT+ GD+
Sbjct: 249 VIWEQEFLTGPDNMCHSIENLEYHYFKYSHLLHAGDVHVHYMGAANLSFAYSVRTEDGDS 308

Query: 301 FEI 303
            EI
Sbjct: 309 IEI 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,186,468
Number of extensions: 54999
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)