BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0019.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313163|ref|YP_003777255.1| hypothetical protein Hsero_3869...   251   4e-68

>gi|300313163|ref|YP_003777255.1| hypothetical protein Hsero_3869
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  251 bits (640), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 156/206 (75%), Gaps = 9/206 (4%)

Query: 6   TSSLPSSLRLAMLAGAVAILAACANTQKTHDPV------AKQVKLDQALALFSNNPVEGL 59
           +S +   L  A +AGA A+LA C+  Q    P+      AKQ +LDQALALFS+NP  GL
Sbjct: 20  SSCMRHILGAACVAGA-ALLAGCSAQQPA--PLDASARQAKQARLDQALALFSSNPAGGL 76

Query: 60  PKDWEPLVLMRKKKTTDYGLVKDGERTVLRAFADKASSGLRHQVNIDPVKQPWLTWSWKT 119
           P  WEPL   RKK  T+Y L+ +  R+VL A+AD+ASSGLRH V+ID  K+PWL+WSWKT
Sbjct: 77  PAGWEPLTFTRKKIPTEYRLIDENGRSVLHAWADRASSGLRHPVDIDINKKPWLSWSWKT 136

Query: 120 SALIKTADNRFRDTEDSPVRIVLAFDGDKSKLSFMDTILFDTAKLVSGHDFPYATLMYIW 179
           + LI TAD R+R+T+DSPVRIVLAFDGD  KLS MDTILFDTAKL++GH+ PYATLMY+W
Sbjct: 137 AGLIPTADLRYRETDDSPVRIVLAFDGDHDKLSLMDTILFDTAKLLTGHELPYATLMYVW 196

Query: 180 ENKAPKETVIANTRTGRIQMLVAESG 205
           ++KA   TVIAN RTGRIQM+VAESG
Sbjct: 197 DSKAEVGTVIANGRTGRIQMMVAESG 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 536,723
Number of extensions: 20212
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)