BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0009.p (153 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 122 1e-29 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 83 1e-17 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 76 2e-15 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 76 2e-15 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 64 6e-12 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 122 bits (306), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/112 (51%), Positives = 80/112 (71%), Gaps = 2/112 (1%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLIDAPGKVAGGRILLNGRDLRSLPAEE 60 VDDVS +V +G+++GLVGESGSGKS+TG+SI+G++DAPG++ GG IL GRDL + Sbjct: 25 VDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRMDKTS 84 Query: 61 MRRIRGNRIAMIFQDPMMTLNPXPMIFQDPMMTLRIPTTSNISTSWTRAWSR 112 +R ++GNRIAMIFQDPMMTLN P++ + M + S +S R +R Sbjct: 85 LRELQGNRIAMIFQDPMMTLN--PVLKVEAQMVDAVLAHSKVSRQQARELAR 134 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 82.8 bits (203), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 57/82 (69%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLIDAPGKVAGGRILLNGRDLRSLPAEE 60 V + F V +G+++ LVGESG GKSMT ++MGL+ + + IL +G DL +P ++ Sbjct: 24 VRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGVDLHGMPDKQ 83 Query: 61 MRRIRGNRIAMIFQDPMMTLNP 82 + ++RG R+AMIFQ+PM +LNP Sbjct: 84 LMQLRGKRMAMIFQEPMTSLNP 105 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 5/82 (6%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLIDAPGKVAGGRILLNGRDLRSLPAEE 60 V+ VSF + G+ + +VGESG GKS TG S++ L+D +AGG++ GRDL LP E Sbjct: 339 VEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVD----IAGGKVEFGGRDLAQLPRSE 394 Query: 61 MRRIRGNRIAMIFQDPMMTLNP 82 +R++R + I IFQDP +L+P Sbjct: 395 LRQLRRD-IQFIFQDPFASLDP 415 Score = 75.1 bits (183), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 6/88 (6%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLID-APGKVAGGRILLNGR-----DLR 54 V D+SF V+QG+ + +VGESGSGKS++ +IM LI+ GK+A G + R DL Sbjct: 27 VRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRLDLA 86 Query: 55 SLPAEEMRRIRGNRIAMIFQDPMMTLNP 82 MR IRG IAMIFQ+PM +LNP Sbjct: 87 QADNATMRSIRGAEIAMIFQEPMTSLNP 114 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 75.9 bits (185), Expect = 2e-15, Method: Composition-based stats. Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 4/83 (4%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGL-IDAPGKVAGGRILLNGRDLRSLPAE 59 VD VSFA+ G+ LVGESGSGK+++ ++M L DA + G ILL+G+D+ + Sbjct: 21 VDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYE---GSILLDGQDVLAKSER 77 Query: 60 EMRRIRGNRIAMIFQDPMMTLNP 82 +M+++RGN +AMIFQ+PM LNP Sbjct: 78 QMQQVRGNDVAMIFQEPMTALNP 100 Score = 59.3 bits (142), Expect = 1e-10, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLIDAPGKVAGGRILLNGRDLRSLPAEE 60 VD V + +G+ +G+VGESGSGKS G M L+ G I +G + P E Sbjct: 293 VDGVDLQLRRGETLGIVGESGSGKSTLG---MALLRLSAASVAGSIRFDGVPISERPQRE 349 Query: 61 MRRIRGNRIAMIFQDPMMTLNPXPMIFQ 88 +R +R +R+ ++FQDP +L+P + Q Sbjct: 350 LRPLR-SRMQVVFQDPFASLSPRRTVEQ 376 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 63.9 bits (154), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%) Query: 1 VDDVSFAVEQGQVMGLVGESGSGKSMTGYSIMGLIDAPGKVAGGRILLNGRDLRSLPAEE 60 +D V V G+V+GLVGESG GKS G GL+D + G++L+NGRD SL + E Sbjct: 45 LDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDP----SDGQVLVNGRDRASLSSRE 100 Query: 61 MRRIRGNRIAMIFQDPMMTLNPXPMIFQ 88 R ++ MIFQ+P +LNP I Q Sbjct: 101 EAEAR-LQVQMIFQNPYASLNPRLRIDQ 127 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.133 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 517,441 Number of extensions: 20810 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 11 Length of query: 153 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 76 Effective length of database: 1,255,275 Effective search space: 95400900 Effective search space used: 95400900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 126 (53.1 bits)