BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0215.0004.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 451 e-128 gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 308 4e-85 gi|300310886|ref|YP_003774978.1| amino acid ABC transporter peri... 288 4e-79 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 172 2e-44 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 166 2e-42 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 451 bits (1159), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/260 (86%), Positives = 239/260 (91%) Query: 2 MKLSKLLLGLMAGALLISTSVARADALDDIHKAGVLRVAVPQDFPPFGSVTSDLKPQGLD 61 MKL+KLLLGLMAGA++ S SVARADALDDI K G LRVAVP DFPPFGSV +DLKPQGLD Sbjct: 1 MKLTKLLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 Query: 62 IDVASLIAKKLGVKVELIPVTSANRVPYLQTKKVDLVISSMGKNAEREKVIDFTAAYAPF 121 IDVA+LIAKKLGVKVELIPV+SANR+PYL TKKVDLVISSMGKNAEREKVIDF+AAYAPF Sbjct: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 Query: 122 FNGVFGPADQKVSGPADLAGKTIGVTRGSVEDLELSKIVPASATVKRYEDNNGTISSFLS 181 FNGVFGPAD V ADLAGKTI VTRGSVEDLEL+KIVPASATVKRYEDNN TISSFLS Sbjct: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 Query: 182 NQVQLVATGNVIAAAIIAKNPPKKPETKFLIKDSPCFIGLNKDEKKLQDKVNAILAEIKK 241 QVQLVATGNV+AAAIIA+NPPKKPETKFLIKDSPCFIGLNK EKKLQDKV+AILAE KK Sbjct: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 Query: 242 DGELSALTVKWLGLPLPANL 261 DG LSA++ KWLG+PLPA L Sbjct: 241 DGSLSAISQKWLGMPLPAGL 260 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 308 bits (788), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 150/260 (57%), Positives = 191/260 (73%) Query: 2 MKLSKLLLGLMAGALLISTSVARADALDDIHKAGVLRVAVPQDFPPFGSVTSDLKPQGLD 61 M K +L ++ G + +ARADAL DI K GV+R+ VPQDF PFGSV +DL+ QGLD Sbjct: 3 MSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQGLD 62 Query: 62 IDVASLIAKKLGVKVELIPVTSANRVPYLQTKKVDLVISSMGKNAEREKVIDFTAAYAPF 121 IDVA LIA+K+GVK++L+PV SANR+ YLQT K DLVIS++G+NAEREKVIDF+ YAP+ Sbjct: 63 IDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYAPY 122 Query: 122 FNGVFGPADQKVSGPADLAGKTIGVTRGSVEDLELSKIVPASATVKRYEDNNGTISSFLS 181 N VFG A KVSGPADLA KT+GV RG+ +DL+L+ P SAT+KRYEDNN IS+++S Sbjct: 123 NNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 182 Query: 182 NQVQLVATGNVIAAAIIAKNPPKKPETKFLIKDSPCFIGLNKDEKKLQDKVNAILAEIKK 241 QVQLV TG+ +A A+ K P KP K++I++S C +GLNK E L KVN L KK Sbjct: 183 GQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAAKK 242 Query: 242 DGELSALTVKWLGLPLPANL 261 GEL+ + KWL +PLPA + Sbjct: 243 SGELNGIVQKWLNVPLPAKM 262 >gi|300310886|ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 288 bits (736), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 141/250 (56%), Positives = 182/250 (72%), Gaps = 4/250 (1%) Query: 9 LGLMAGALLISTSVARADALDDIHKAGVLRVAVPQDFPPFGSVTSDLKPQGLDIDVASLI 68 LGLMA ++ A AD L DI KAGV+++ VPQDF P+GSVTSDL+ QGLDIDVA L+ Sbjct: 12 LGLMA----VAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARLV 67 Query: 69 AKKLGVKVELIPVTSANRVPYLQTKKVDLVISSMGKNAEREKVIDFTAAYAPFFNGVFGP 128 AK +GVK EL+PV ++R+ +LQT K+DL+IS++GKNAEREKVIDF+ YAP+ N VFG Sbjct: 68 AKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGV 127 Query: 129 ADQKVSGPADLAGKTIGVTRGSVEDLELSKIVPASATVKRYEDNNGTISSFLSNQVQLVA 188 A KV+GPADLA +T+GV R + EDL L+ VP S +KRYEDNNG I++++S QVQLV Sbjct: 128 AAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLVG 187 Query: 189 TGNVIAAAIIAKNPPKKPETKFLIKDSPCFIGLNKDEKKLQDKVNAILAEIKKDGELSAL 248 TG+ +A A+ K P KP K++I S C++G+NK E L KVN L KK GEL+ + Sbjct: 188 TGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNGI 247 Query: 249 TVKWLGLPLP 258 KWL +PLP Sbjct: 248 VKKWLNVPLP 257 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 141/238 (59%) Query: 24 RADALDDIHKAGVLRVAVPQDFPPFGSVTSDLKPQGLDIDVASLIAKKLGVKVELIPVTS 83 +AD LD I A LRVA+ PP+ L+ G D++ A +AK G+++E++P T Sbjct: 27 QADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTL 86 Query: 84 ANRVPYLQTKKVDLVISSMGKNAEREKVIDFTAAYAPFFNGVFGPADQKVSGPADLAGKT 143 NRVPYLQT K D+VIS+ ER KVIDF+ YAP V P K++ PADLAGK Sbjct: 87 TNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKK 146 Query: 144 IGVTRGSVEDLELSKIVPASATVKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNPP 203 I TRG+ D EL+KI P+SAT+ R++D+ ++++ +S Q + AT ++ + KNP Sbjct: 147 IIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPS 206 Query: 204 KKPETKFLIKDSPCFIGLNKDEKKLQDKVNAILAEIKKDGELSALTVKWLGLPLPANL 261 + E+K +K + +GL K E +L++K++ + +GEL+ + K+ LP + Sbjct: 207 RDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPPEI 264 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 166 bits (419), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 133/229 (58%) Query: 30 DIHKAGVLRVAVPQDFPPFGSVTSDLKPQGLDIDVASLIAKKLGVKVELIPVTSANRVPY 89 DI + VA+ PPFG + L+PQG D++ A L+AK LGV++E++ VT NR+P+ Sbjct: 32 DIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPNRIPF 91 Query: 90 LQTKKVDLVISSMGKNAEREKVIDFTAAYAPFFNGVFGPADQKVSGPADLAGKTIGVTRG 149 L T K D+VISS ER+KV+ FT Y V P + + DL GK + V RG Sbjct: 92 LMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVAVVRG 151 Query: 150 SVEDLELSKIVPASATVKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNPPKKPETK 209 +++D L+ I P + R++D+ ++ +S QV + T N +A+AI +NP K ETK Sbjct: 152 NMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNLETK 211 Query: 210 FLIKDSPCFIGLNKDEKKLQDKVNAILAEIKKDGELSALTVKWLGLPLP 258 F IKD P IGL K E L+ +N ++ K+G+L + +W+G P+P Sbjct: 212 FAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIYQQWVGSPMP 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 672,081 Number of extensions: 25029 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 17 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)