BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0215.0001.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313522|ref|YP_003777614.1| 5'-nucleotidase [Herbaspirillum...   242   1e-65

>gi|300313522|ref|YP_003777614.1| 5'-nucleotidase [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  242 bits (618), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/152 (78%), Positives = 128/152 (84%), Gaps = 3/152 (1%)

Query: 51  DAVLFSRESEQIYAEKGLEAFVRHEQRHRNKAMKEGPLAKLLFALAEIQKQFTPETCPVR 110
           DAVLFS ESE+I+AEKGLEAF RHEQRHR KAMKEGP AKLL AL+ IQKQF P  CPVR
Sbjct: 165 DAVLFSAESERIFAEKGLEAFARHEQRHRKKAMKEGPFAKLLLALSAIQKQFPPAQCPVR 224

Query: 111 IAIVTARNSPAHKRVIHTLRTWNVTVDEAFFLGGLPKADVLHAFGAHMFFDDQEGHVELA 170
           IAIVTARNSPAH+RVIHTLRTWNVTVDEAFFLGGL KA+VL AFGAHMFFDDQEGHV+ A
Sbjct: 225 IAIVTARNSPAHQRVIHTLRTWNVTVDEAFFLGGLNKAEVLQAFGAHMFFDDQEGHVQKA 284

Query: 171 SAVVPSGRVPYEGGAL-GVR--NVRKSPKASP 199
           + VVPSGRVPY+GG L G R   VR     +P
Sbjct: 285 AVVVPSGRVPYKGGTLEGARVARVRAGKSGTP 316



 Score = 64.3 bits (155), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 23/153 (15%)

Query: 22  MAYDLSGMLVIGISSRALLFSRESEQIYXDAVLFSRESEQIYAEKGLEAFVRHEQRHRNK 81
           M YDLS  LVIGISSRA LF  E E               IY ++G++A+ ++++ H N 
Sbjct: 1   MPYDLSDKLVIGISSRA-LFDLEVEN-------------AIYDQQGVDAYAQYQRDHEND 46

Query: 82  AMKEG---PLAKLLFALAEIQKQFTPETCPVRIAIVTARNSP-AHKRVIHTLRTWNVTVD 137
            ++ G   PL K L  L E+      +   V + +V +RN+P    R  + +    + + 
Sbjct: 47  PLQPGTAFPLVKALLQLNEL----IADRRLVEV-VVISRNTPDTGLRAFNAIAAHKLDIS 101

Query: 138 EAFFLGGLPKADVLHAFGAHMFFDDQEGHVELA 170
            A F GG P A  L AF   +F     G V+ A
Sbjct: 102 RAAFTGGGPTAPYLQAFKIDLFLSRDTGDVQEA 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 651,342
Number of extensions: 25712
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)