BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0031.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel A...   153   8e-39

>gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  153 bits (387), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 77/83 (92%)

Query: 7   PLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAPLLAPHDPYDQNVAQRLIPPVWNAQGS 66
           P WRRKL R+LGHRGL++GAA+LAVIVLAA+FAPLLAPHDP+DQ+V  RLIPPVW AQGS
Sbjct: 22  PAWRRKLRRLLGHRGLMIGAAVLAVIVLAAIFAPLLAPHDPFDQDVTARLIPPVWQAQGS 81

Query: 67  WEHILGTDKLGRDYLSRLIHGAR 89
           WEHILGTDKLGRDY SRLI+GAR
Sbjct: 82  WEHILGTDKLGRDYFSRLIYGAR 104


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,282
Number of extensions: 11712
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)