BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0029.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313575|ref|YP_003777667.1| S-adenosylmethionine synthetase...   457   e-130

>gi|300313575|ref|YP_003777667.1| S-adenosylmethionine synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/247 (93%), Positives = 240/247 (97%)

Query: 20  AIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDGRPVAIDTIVLSTQHAPEMEHK 79
           AIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDG+PVAIDT+VLSTQH+PEM+ K
Sbjct: 141 AIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDGKPVAIDTVVLSTQHSPEMDQK 200

Query: 80  AIEEAAIEEIIRPVVPAEWIKNTRYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPH 139
            I EAAIEEII+PV+PAEW+KNTRYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPH
Sbjct: 201 DIHEAAIEEIIKPVLPAEWLKNTRYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPH 260

Query: 140 GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCQIQVSYAIGIAKPTSVMVTTFGT 199
           GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLA RCQIQVSYAIGIAKPTSVMVTTFGT
Sbjct: 261 GGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCQIQVSYAIGIAKPTSVMVTTFGT 320

Query: 200 GKISDEKLAQLVLEHFDLRPKGIVQMLDLLRPIYQKTAAYGHFGREEPEFSWERTDKAAA 259
           GKISDEKLAQLV EHFDLRPKGIVQMLDLLRPIY KTAAYGHFGREEPEF+WERTDK AA
Sbjct: 321 GKISDEKLAQLVQEHFDLRPKGIVQMLDLLRPIYAKTAAYGHFGREEPEFTWERTDKVAA 380

Query: 260 LKAAAGL 266
           L+A+AGL
Sbjct: 381 LRASAGL 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 881,682
Number of extensions: 37106
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)