BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0028.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313574|ref|YP_003777666.1| adenosylhomocysteinase [Herbasp...   348   3e-97

>gi|300313574|ref|YP_003777666.1| adenosylhomocysteinase
           [Herbaspirillum seropedicae SmR1]
          Length = 468

 Score =  348 bits (894), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 171/220 (77%), Positives = 190/220 (86%), Gaps = 7/220 (3%)

Query: 18  TTNSTKDYVIADISLAQWGHKEIKIAETEMPGLMAIREEFAAAQPLKGARITGSIHMTIQ 77
           TTN T+DY++ADI LA WGHKEIKIAETEMPGLMAIREEFAA+QPLKGARITGS+HMTIQ
Sbjct: 2   TTNPTQDYIVADIKLADWGHKEIKIAETEMPGLMAIREEFAASQPLKGARITGSLHMTIQ 61

Query: 78  TAVLIQTLEALGAKVRWASCNIYSTQDHAAAAXCNIYSTQEGTPVFAFKGESLDDYWEFT 137
           TAVLIQTLEALGA+VRWASCNIYSTQDHAAAA         GTPVFA KGE+LD+YWE+T
Sbjct: 62  TAVLIQTLEALGAQVRWASCNIYSTQDHAAAA-----IAANGTPVFAIKGETLDEYWEYT 116

Query: 138 HRIFEWQGGENEQANMILDDGGDATLLLHLGTRAEKDASVLNNPTSEEEICLFNSIKKKL 197
           HRIFEW  G    +NMILDDGGDATLLLHLG+RAE D SVL+ P SEE +CLFN+IK+ L
Sbjct: 117 HRIFEWTDG--GYSNMILDDGGDATLLLHLGSRAEADISVLDKPDSEEAVCLFNAIKRYL 174

Query: 198 ATSSNWYSTRLAQIKGVTEETTTGVHRLYQMFKDGKLAFP 237
           A  ++WYS RL +IKGVTEETTTGVHRLYQM K+GKLAFP
Sbjct: 175 AKDASWYSKRLKEIKGVTEETTTGVHRLYQMHKEGKLAFP 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,535
Number of extensions: 43143
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)