BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0019.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313570|ref|YP_003777662.1| soluble lytic murein transglyco...   369   e-103

>gi|300313570|ref|YP_003777662.1| soluble lytic murein
           transglycosylase precursor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 666

 Score =  369 bits (946), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/207 (82%), Positives = 193/207 (93%)

Query: 127 AEFARQSDVLDRMVNTSDRTKQEMDFTQRFPAPHLGEMTANTRPLGLENAWVYGLIRQES 186
           AE+ARQ+DVLDRMVNTSDRTK E DFTQRFPAPHL EM A T+PLG+ENAWVYGLIRQES
Sbjct: 460 AEYARQNDVLDRMVNTSDRTKSEFDFTQRFPAPHLPEMNAATKPLGMENAWVYGLIRQES 519

Query: 187 RFIKNAKSYVGASGLMQLMPSTAKYVAKKIGMTEFTQDQINDINTNLLLGTSYLNMVLNN 246
           RFIK+A+S+VGASGLMQLMP+TAK+VA+KIGM+EFT DQ+NDINTNLLLGTSYL+MVLNN
Sbjct: 520 RFIKSARSHVGASGLMQLMPATAKFVARKIGMSEFTADQVNDINTNLLLGTSYLDMVLNN 579

Query: 247 LDGSQALATAAYNAGPGRPRSWRSTLNRSVEGAIFAETIPFNETRGYVKNVMSNATYYAA 306
           L+GS+ LATA YNAGPGRPR+WR+TL R+VEGAIFAE IPFNETRGYVKNVMSNATYYAA
Sbjct: 580 LEGSETLATAGYNAGPGRPRTWRATLPRTVEGAIFAEIIPFNETRGYVKNVMSNATYYAA 639

Query: 307 LFENKPQSLKQRLGVVAPRTNTPTDLP 333
           +FEN+PQSLKQR+G VAP +N  TDLP
Sbjct: 640 MFENRPQSLKQRMGTVAPNSNVATDLP 666



 Score =  209 bits (532), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/123 (79%), Positives = 108/123 (87%)

Query: 3   EIRDFLNRYDGTAIGDRLRNDWLLALGKTGDWSTFDEQYPLFVLNDDVQVKCFALNSRAL 62
           EIRDFL R+DG AI DRLRNDWLLALGKTG+W+ FDEQYP FVLNDD QVKCFALNSRAL
Sbjct: 104 EIRDFLARWDGQAIVDRLRNDWLLALGKTGNWAVFDEQYPKFVLNDDTQVKCFALNSRAL 163

Query: 63  KGQNVADEARALLTSPKDYGQGCSDLIGTLAQNHQFGESDLWAQIRQAVEAGSIMVARRA 122
           KG+NVA+EARALLT+PKDYGQGCSDLI TLAQN QF ++D+W QIRQA E G+  VARRA
Sbjct: 164 KGENVAEEARALLTNPKDYGQGCSDLIATLAQNGQFSQADVWFQIRQAAENGNATVARRA 223

Query: 123 AXL 125
           A L
Sbjct: 224 AVL 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 997,577
Number of extensions: 38647
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)