BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0016.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313568|ref|YP_003777660.1| glutathione S-transferase [Herb...   152   2e-38
gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [He...   110   1e-25
gi|300309973|ref|YP_003774065.1| glutathione S-transferase [Herb...    65   5e-12

>gi|300313568|ref|YP_003777660.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  152 bits (384), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 88/121 (72%), Gaps = 5/121 (4%)

Query: 76  LEKAGKNAITLVIGNKNYSSWSMRPWVVLTAFDIPFREIRICLDQPDTASKIAEYSAAGR 135
           L+KAG++  TLVI NKNYSSWSMRPWV + AFDIPF+E+R+ LDQ DTA++IA Y+ +GR
Sbjct: 14  LQKAGRHLPTLVIANKNYSSWSMRPWVAMVAFDIPFKEVRLLLDQADTAAEIARYTGSGR 73

Query: 136 VPVLLDGQTHIWDSLAICEYLAEQFPDRALWPQETAAXFPDRALWPQERARAQHHGRNAF 195
           VPVLLDG   IWDSL+ICEYLAEQFPDR LWP  T A    R++  +      H G    
Sbjct: 74  VPVLLDGDIAIWDSLSICEYLAEQFPDRHLWPARTDARAIARSICAE-----MHSGFTGL 128

Query: 196 R 196
           R
Sbjct: 129 R 129


>gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase
          [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  110 bits (275), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 56/63 (88%)

Query: 1  MKIYVVGGAVRDELLGLPVQDHDYVVVGATPEDMLAQGFRPVGKDFPVFLHPDTQEEYAL 60
          MK Y VGGAVRD LLGLPV+D D+VVVGATPE +LA GFRPVGKDFPVFLHP TQEEYAL
Sbjct: 1  MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHTQEEYAL 60

Query: 61 ART 63
          ART
Sbjct: 61 ART 63


>gi|300309973|ref|YP_003774065.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 65.1 bits (157), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 85  TLVIGNKNYSSWSMRPWVVLTAFDIPFREIRICLDQPDTASKIAEYSAAGRVPVLLDGQT 144
           TL I +KNYSSWS+R W++     + F E  +  D P   ++I   S++  VP L  G  
Sbjct: 5   TLRITSKNYSSWSLRGWLMARFAGLSFEEDIVPPDDPSARAEILLLSSSILVPSLHHGDV 64

Query: 145 HIWDSLAICEYLAEQFPDRALWPQETAAXFPDRALWPQERARAQHHGRNAFRLHRPAQRH 204
            +WD+LAI EYL E  P   L P + AA    R++  +      H G +A R   P    
Sbjct: 65  LVWDTLAIAEYLNEIRPAAKLLPADLAARAHCRSVCGE-----MHSGFSALRAALPMNLK 119

Query: 205 EH 206
            H
Sbjct: 120 GH 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 861,606
Number of extensions: 37769
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)